A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 9-Oct-2019 number of released structures: 10416
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NDB ID: 5NZ6  PDB ID: 5NZ6 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
16A_A5:A19_A4.7540.571-0.862-7.978-13.122-101.159
17A_A35:U18_A0.109-0.2320.2710.929-1.182-5.856
11A_C1:G24_A0.219-0.3440.0170.176-0.527-2.368
18A_C36:G17_A0.383-0.3370.563-1.836-5.122-0.584
113A_C41:G12_A-0.566-1.1690.062-2.251-13.4-10.109
12A_CBV2:G23_A-0.638-0.2320.6492.038-9.704-7.915
111A_CBV39:G14_A-0.532-0.138-0.0622.23-5.349-0.706
13A_G3:C22_A-0.108-0.277-0.015-1.656-1.8713.361
14A_G4:C21_A-0.161-0.364-0.064.094-1.494-2.402
15A_G29:C20_A0.016-0.20.088-11.626-4.4582.888
19A_G37:C16_A-0.405-0.393-0.064-0.544-0.890.037
110A_G38:C15_A-0.216-0.4640.054-1.0870.609-4.755
112A_G40:C13_A-0.219-0.3930.319-0.87-8.966-0.745

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.