A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 13-Sep-2017 number of released structures: 9117
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NDB ID: 5O6U  PDB ID: 5O6U 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
13A_A11:DT12_I-0.780.291-0.1589.282-6.2928.815
14A_A12:DT11_I-0.135-0.039-0.519-16.9987.0467.665
15A_A13:DT10_I-0.015-0.531-0.6598.434.467-10.938
18A_A17:DT6_I-1.641-0.003-0.0123.4587.81911.393
110A_A19:DT4_I-0.049-0.413-1.535-4.72223.421-7.895
12A_C10:DG13_I-0.6280.088-0.2032.15-8.843-0.752
16A_C15:DG8_I-0.1190.3150.137-48.79934.2357.191
111A_C21:DG2_I1.7140.282-0.984-48.5512.812-40.835
112A_C28:G42_A-0.151-0.0440.254-20.116-12.7672.646
113A_C29:G41_A0.9810.2810.497-5.885-13.172-1.204
115A_C31:G39_A0.176-0.13-0.233-2.396-10.5282.263
116A_C32:G38_A0.39-0.1660.3953.37710.9893.143
11A_G9:DC14_I-0.569-0.433-0.6-13.1616.424-1.229
114A_G30:C40_A0.023-0.115-0.172-2.448-13.9130.651
117A_G33:A37_A6.518-4.6781.3829.7749.676-0.142
17A_U16:DA7_I2.166-0.0120.048-28.38.255-9.56
19A_U18:DA5_I1.030.011.238-10.44932.2564.452
118H_DC2:DG26_I-0.15-0.052-1.285-19.275-1.279-13.896
119H_DC4:DG25_I-1.0860.9820.9061.152-11.88914.082
122H_DC7:DG22_I1.5120.4550.6132.631-21.25616.957
123H_DC8:DG21_I1.5250.0050.9521.292-17.90216.932
124H_DC9:DG20_I1.027-0.4361.637-1.873-6.01510.404
125H_DC10:DG19_I0.223-0.5941.603-1.2927.7284.905
127H_DC13:DG16_I-0.920.5740.1973.116-8.1378.338
120H_DG5:DC24_I-0.5481.2940.214-3.988-18.57811.832
121H_DG6:DC23_I0.2091.1680.986.196-18.63912.105
126H_DT12:DA17_I-0.8530.1981.278-10.869-18.7446.235

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.