A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 13-Oct-2021 number of released structures: 11721
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NDB ID: 5OBM  PDB ID: 5OBM 


Base Pair Morphology Step Parameters

CSV Format

Model NumberStep NumberStep NameShiftSlideRiseTiltRollTwistX-DisplacementY-DisplacementHelical RiseInclinationTipHelical Twist
1411_A6C7:G152U153_44-0.612-1.043.162-5.215-2.00949.038-1.0990.3523.244-2.4126.2649.336
1911_A11A12:U146U147_44-1.071-1.6363.182-3.3653.37940.24-2.7281.1833.1164.894.8740.51
11011_A12A13:U145U146_440.1-0.9162.8266.809-0.2332.582-1.5670.8122.796-0.404-11.97333.268
11111_A13C15:G144U145_440.876-1.9543.2753.9334.51333.409-4.057-0.8833.0737.773-6.77433.926
11311_A16G17:C142U143_440.927-1.0613.0411.2537.6126.449-3.891-1.6732.67716.199-2.66827.531
11711_A20G21:A138U139_44-0.858-0.813.0386.4497.4632.011-2.4882.4252.57313.142-11.36133.458
13311_A26G330:A33G59_413.495-0.15-1.33621.586168.505165.5930.007-1.758-1.28984.292-10.798178.733
12111_A45U46:U37U38_110.596-1.3754.2246.15614.29146.329-3.031-0.1343.71717.591-7.57848.736
12411_A48U50:A34A35_111.719-2.821.081122.293130.60228.742-1.55-0.729-0.58865.597-61.424178.954
12611_A51A52:U32G33_110.502-1.2883.278-8.3587.54645.094-2.248-1.3162.9069.66210.70246.408
12711_A52G53:C31U32_11-0.554-1.1143.593-10.9596.52854.317-1.608-0.1043.4927.04211.82255.683
18911_A65G110:C321U322_112.403-2.4674.119-8.94519.50483.803-2.321-1.9963.37414.3976.60386.012
16311_A66C68:G75G76_110.5840.0232.681-2.3356.86760.469-0.246-0.6682.6476.7922.3160.862
17411_A95G96:C90G91_112.013-1.4813.1496.8054.6953.656-1.906-1.7993.2335.161-7.48954.242
17811_A99A100:A85U87_110.7610.8343.1375.8290.907-94.079-0.5850.623.092-0.6193.98-94.221
17911_A100G101:U84A85_11-2.4492.4951.328135.233109.245-146.251-1.373-1.0691.369-54.70667.719-178.214
18511_A106A325:U78U79_112.1422.5923.29164.643-56.599-60.094-0.932.140.62628.77883.714-174.894
19411_A114A265:U153U154_111.8315.1-2.646155.822-18.195-98.404-2.689-0.078-2.8129.41780.65-164.953
16511_A122A123:U149G148_113.3123.1893.61212.5611.597-13.722-10.41214.7250.171-5.40842.542-18.651
17211_A130C131:G137U138_110.226-1.5413.344-3.43810.07735.229-3.76-0.8062.7816.1985.52636.754
19511_A157G158:C263G264_111.738-0.6813.865-0.2871.09859.982-0.745-1.7553.8461.0980.28759.992
19711_A159G160:U261U262_110.029-1.8972.662-3.4622.11226.24-4.572-0.7852.484.6177.56926.546
110211_A165C166:G256U257_11-0.807-1.7452.948.64910.1928.138-4.7722.7931.88619.62-16.65331.093
112311_A211A187:G227U228_11-3.189-1.3573.444.0521.564-55.911.346-3.143.678-1.6664.315-56.065
112811_A222U223:G206U207_110.313-1.4443.0690.87-1.78344.585-1.747-0.3373.127-2.349-1.14744.627
114011_A268U270:A295A296_112.766-1.7010.47101.443129.612-47.6960.7731.46-0.142-68.40853.541-165.913
114411_A273G274:C291U292_11-0.308-1.4183.3752.7664.80839.096-2.6680.7833.1577.141-4.10839.472
18711_A324G64:A323A77_11-0.15-3.102-2.214102.517-123.107-43.4820.216-1.205-2.95266.31855.226-161.624
18611_A325A324:A77U78_110.847-1.362-3.063-4.198-7.089147.454-0.738-0.424-3.047-3.6922.186147.541
13811_A334G335:C28U29_44-0.45-1.9363.2220.185.3927.386-5.2080.9732.79411.247-0.37627.902
14011_A336G337:U26U27_44-0.837-1.6022.7280.6457.97824.528-5.2752.0122.08918.17-1.46925.781
14511_A342G368:C21U22_442.124-1.4273.611-15.39316.80775.358-1.608-2.1212.88213.45812.32678.237
14411_A344A342:U22A349_413.272-1.6422.68174.667154.897-86.406-0.0662.0661.88-78.58937.883-174.137
117311_A352U354:A365A366_112.815-1.5211.076113.822129.159-118.3210.5931.5570.556-64.99557.277-175.981
117511_A355C356:G363G364_11-0.34-0.7942.9173.2880.90558.646-0.8520.4972.8840.923-3.35458.737
117711_A357G358:A361U362_11-4.08-1.0742.989-6.01221.45850.41-2.3594.0972.7923.96.69654.82
14711_A369G404:C19U20_44-0.971-1.2243.0174.702-0.27526.421-2.5743.1842.817-0.597-10.18426.83
117811_A386A387:U382G383_112.189-0.9662.9924.7897.34754.985-1.43-2.0893.0167.901-5.1555.626
117911_A387G388:U381U382_110.749-1.7042.972-5.0225.36128.292-4.36-2.4042.44810.74110.06229.212
118111_A389G390:C379U380_111.157-2.3243.87211.516.32620.211-7.9711.5863.20216.023-29.15624.067
118311_A391G392:G400A377_11-1.212-0.653.9771.6422.98299.795-0.4810.8233.9461.949-1.07399.838
113711_A395A399:A375A372_110.382-0.0866.162-3.536-1.301112.274-0.023-0.3076.153-0.7832.129112.315
113911_A397C403:G376A374_110.124-3.014-5.534-160.69211.126105.87-1.3971.628-4.6365.69482.228168.628
113811_A399A397:A374A375_11-0.055-0.0283.327-1.3684.479-48.727-0.312-0.1723.315-5.414-1.653-48.938
15111_A407A408:G15G16_44-0.616-0.5982.646-8.4978.22627.982-2.49-0.2142.45516.1316.66230.333
15211_A408A409:C14G15_44-1.218-0.0712.341-0.121-0.50534.297-0.0642.0512.346-0.8570.20634.301
15311_A409U410:A13C14_442.031-0.6794.345-3.69723.79168.878-1.596-1.8773.87120.4163.17372.472
16011_A416A417:U6U7_44-0.23-0.8523.108-6.80411.25933.396-2.871-0.5242.68618.71511.30935.825
16111_A417A418:U5U6_44-0.368-1.2842.9490.8982.18824.875-3.5431.0862.8125.066-2.07924.985
16211_A418G419:C4U5_44-0.185-1.3173.4844.1986.32436.675-2.9080.8573.1829.921-6.58537.425
119411_A428U429:A630U631_11-0.293-0.9173.341.96612.41126.153-4.4651.0032.61625.629-4.05928.967
119911_A433U434:G625U626_11-0.174-1.5513.679-0.5834.09242.407-2.590.1753.5235.6410.80342.599
120211_A436G437:A621U623_111.1820.2733.422-1.767-13.92569.2670.744-1.0883.297-12.1251.53870.5
120611_A498G499:C614U615_11-0.354-1.7543.155.4176.43936.359-3.521.2072.73210.152-8.54137.288
120911_A501U502:A611U612_11-0.376-0.9633.2290.074-2.63428.032-1.3620.793.303-5.423-0.15228.153
121211_A504G505:C586U587_11-0.504-1.683.6013.36411.78435.84-4.1361.2182.86918.494-5.2837.812
122411_A516G517:C573U574_110.283-1.7163.0539.1271.70228.926-3.5971.1732.9023.302-17.70430.35
122711_A521A522:A570U571_110.317-2.3293.1694.128-4.42342.01-2.765-0.0143.4-6.131-5.72242.424
122811_A522A523:A569A570_110.549-3.0033.5052.3322.76538.559-4.883-0.5293.3174.175-3.52238.722
122911_A523U524:G568A569_111.989-2.3743.432-2.587-1.72427.824-4.482-4.753.374-3.5715.35927.994
123311_A527U528:G564U565_11-0.083-1.0773.2484.1132.09338.876-1.8540.6083.1643.131-6.15339.139
123511_A529G530:C562U563_11-0.078-2.1193.59510.44817.80134.693-5.0161.2482.1927.093-15.90240.206
123811_A532U555:A533G560_112.298-2.2872.236-151.295-84.62270.496-0.791-1.7840.567-42.99776.873174.573
124111_A537G538:U553A554_110.717-0.6093.625-1.897-2.03856.652-0.515-0.8713.619-2.1461.99856.715
124911_A598C599:G604U605_11-0.504-1.0813.0132.950.59534.041-1.9261.2832.9421.014-5.02634.169
125211_A649C650:G639U640_11-1.162-0.6392.8584.76313.33734.244-2.4792.3572.28521.544-7.69436.976
128311_A665A666:U796U797_110.162-0.9083.5084.74312.56231.041-3.6560.5122.92622.216-8.38733.755
128411_A666C667:G795U796_110.095-2.3233.281-1.3689.33625.282-7.08-0.512.28420.4452.99626.959
128911_A672U673:A789U790_111.145-1.7283.225.8949.37624.175-6.061-1.0482.58521.031-13.22126.557
129211_A677G678:C702G703_11-1.75-3.2342.25892.775-128.27177.305-0.6771.5772.662-67.395-48.745163.098
130011_A706U707:G712U713_110.77-1.5153.41-2.88910.65534.758-3.857-1.6212.77117.3044.69136.418
130211_A736G737:C732G733_112.513-0.9952.1046.933.19355.221-1.19-2.4172.3223.426-7.43655.705
130411_A738G739:C730U731_11-0.363-1.7953.89611.66611.07431.395-4.7692.4952.8218.984-20.035.184
130911_A744C745:G725G726_110.17-0.8173.452-3.89711.90457.338-1.476-0.3833.22312.2454.00858.577
131111_A746A747:U723U724_11-0.234-1.8893.0893.2811.86728.756-5.3820.9522.12322.629-6.25431.23
131211_A747U748:G722U723_110.988-1.833.3378.2579.97333.948-4.311-0.4522.86116.36-13.54536.265
131611_A751C752:G781U782_11-0.2-2.7313.3665.826-6.13632.714-3.6091.3833.714-10.672-10.13533.761
132011_A755U756:A775U777_110.954-1.792.828-5.54610.62138.073-3.578-1.8982.1215.818.25539.847
132611_A761U762:G769G770_11-0.576-1.6522.806-10.473-1.39515.92-4.314-3.2652.778-4.45233.43519.088
132911_A806A807:G934U935_11-3.243-2.0882.21615.426169.959119.176-1.4411.6590.71585.617-7.771175.275
133011_A807A808:U932G934_11-2.935-2.4323.68632.959-142.326-94.0322.245-1.2651.61675.43217.468-157.065
133111_A808G809:C931U932_111.242-1.0893.584-13.409-7.686124.248-0.544-0.8253.537-4.347.572124.797
133311_A810U811:A929U930_11-0.375-1.6453.601-3.2171.15731.339-3.2650.0333.5592.1345.93331.52
134411_A820U821:A904U905_110.469-1.0733.3527.12217.01925.443-5.0460.4122.26433.586-14.05531.339
135111_A827A828:U897U898_11-0.149-1.83.3588.3417.06133.24-4.0321.4692.81111.949-14.11534.942
135211_A828U829:A895U897_11-0.876-1.6573.0920.22810.54377.364-1.5880.7022.8818.398-0.18277.968
135311_A848C849:G844G845_112.092-0.7672.6446.043-0.21953.087-0.842-2.0062.852-0.244-6.73753.405
136311_A858G859:U834G835_11-1.560.53.0280.29323.72443.699-1.1171.8862.91429.439-0.36349.446
137011_A866G867:U892C893_111.586-0.6813.342-6.6217.74360.894-1.022-1.8533.0737.5836.48361.659
137811_A876C877:A882U885_11-0.011-1.4843.3831.7123.10784.596-1.1770.0493.3372.307-1.27284.656
138611_A965U966:U955U956_110.889-1.0633.182-1.0957.57443.831-2.064-1.272.94610.0551.45344.461
138811_A967G968:U1114U954_113.333-0.3782.125-13.5564.81653.545-0.557-4.0131.2755.23914.74955.305
139011_A970G971:U1110U1111_11-0.151-1.3242.959-2.35711.37619.504-6.671-0.31.90730.3456.28822.673
139211_A972A973:U1108U1109_110.978-1.553.1233.774-2.38827.577-2.647-1.1343.344-4.968-7.85227.929
139311_A973G974:C1107U1108_111.95-2.1473.095-0.0727.1149.771-16.876-9.3341.23236.1250.36412.081
139911_A983U985:A1099U1100_11-0.939-1.33.13-3.07220.58646.249-2.8330.9062.43624.7893.69950.481
140411_A989U990:G1059U1060_110.382-1.5293.323-0.4237.50436.013-3.415-0.6622.95211.9770.67536.764
140711_A992G993:U1056A1057_11-2.545-2.1413.1149.61114.97236.525-4.3344.4741.47222.335-14.33840.495
141111_A996A997:U1052A1053_11-0.709-1.1163.567-4.9614.7857.638-1.4270.4453.5174.9385.12558.013
141211_A997A998:U1050U1052_112.696-1.0713.677-9.433-0.44853.869-1.138-3.543.207-0.4910.32254.629
141311_A998G999:C1049U1050_110.3-1.4933.6437.74113.83238.822-3.6180.4342.97119.834-11.141.818
141711_A1006U1007:C1043U1044_11-0.391-0.7793.7912.2235.49349.773-1.3730.6463.6716.5-2.63150.102
142011_A1009G1010:A1040U1041_11-1.054-2.483.076-0.6442.48916.057-10.333.3212.7028.8382.28616.261
142211_A1011G1012:C1038U1039_110.923-1.6963.128-3.845.85323.851-5.484-3.1582.47113.7869.04524.843
143311_A1084A1085:U1073U1074_110.302-0.6383.3748.8417.32733.668-3.0970.6342.73627.275-13.91538.742
143411_A1085C1086:G1072U1073_110.807-0.9073.31610.83711.04229.079-3.5180.4542.90520.281-19.90432.86
144011_A1091U1096:G1066U1067_11-2.413-1.2933.758-3.55830.1170.307-2.061.8463.17525.0262.95775.786
144211_A1130C1132:G1126G1127_111.442-1.4442.75-1.31113.55365.435-1.742-1.3532.41812.3981.19966.682
144411_A1133G1134:U1124U1125_112.524-2.7133.0171.37411.86914.516-12.474-7.2530.81539.373-4.55718.781
144611_A1135A1136:U1122U1123_110.123-2.4873.264-2.827.85230.652-5.851-0.6932.54414.5195.21531.741
144711_A1136C1137:U1121U1122_11-1.492-1.4753.4042.8813.21237.138-3.6722.5342.63119.951-4.34939.441
145411_A1143U1368:A951A952_11-3.0112.0620.578-120.668-131.116148.4381.0961.4460.698-65.58360.357179.508
148111_A1203A1204:G1300A1301_11-1.6850.4253.069-7.484-8.985-66.472-0.063-1.7852.9178.131-6.773-67.376
148211_A1204A1205:U1299G1300_111.221-1.0763.836-3.43212.97862.861-1.648-1.3183.51412.2963.25164.134
148311_A1205G1206:C1298U1299_11-0.43-2.2793.398-4.27810.39726.893-6.639-0.012.40721.2168.7329.108
148911_A1212G1213:C1292U1293_110.391-2.2673.9475.4848.94633.913-5.2070.2693.28414.9-9.13435.454
149411_A1217U1218:A1287U1288_110.146-1.9282.9628.8248.44230.511-4.6271.0112.31315.294-15.98632.81
149611_A1225G1226:C1283C1284_11-1.659-0.4433.4383.12714.49450.518-1.4722.0853.1116.578-3.57652.512
150411_A1317G1319:C1187U1188_11-2.638-2.9961.02285.954-142.306129.931-1.2681.4611.433-71.701-43.308174.193
151211_A1326C1327:G1172U1173_111.394-2.0483.291-0.219-1.92132.432-3.316-2.5313.394-3.4360.39232.488
151611_A1330A1332:U1167U1168_111.784-2.8113.721-2.616-4.4576.292-2.121-1.533.802-3.5992.11576.44
151711_A1332C1333:G1166U1167_11-0.653-1.6493.09-10.627-4.24230.032-2.21-0.7563.321-7.83819.63432.091
152211_A1337C1338:G1161U1162_110.154-1.9463.238-5.8918.82940.649-3.571-0.7852.72912.4548.3141.955
152811_A1343G1344:C1360U1361_11-1.025-1.3733.282-2.3623.46134.765-2.81.3513.1965.7663.93635.009
145611_A1369G1370:C949G950_110.587-1.4113.614-4.2314.49353.854-1.847-0.9253.4434.9424.65454.18
146011_A1373G1374:C945U946_11-0.322-1.2862.841-6.080.28128.697-2.594-0.5152.8350.55912.09429.322
146811_A1381G1382:C1424U1425_11-1.274-1.8233.126-1.444-0.94430.322-3.2952.153.236-1.8032.75830.37
153311_A1393A1394:C1416G1417_110.276-0.0122.854-9.268-5.97736.8520.626-1.4182.68-9.20514.27338.412
153411_A1394G1395:U1415C1416_110.956-1.3623.3721.2485.45446.186-2.19-1.1053.2236.922-1.58546.505
154011_A1401C1402:G1409U1410_11-0.33-2.0883.036-3.799-0.60423.53-4.869-0.3763.102-1.4689.23723.838
125811_A1435C1437:G658G659_111.687-0.393.5361.16717.14855.76-1.377-1.6693.32917.868-1.21658.146
127011_A1449G1450:C2354G2355_111.3560.0053.272-3.977.50659.351-0.363-1.5533.1637.5383.98759.901
154411_A1467U1470:A1462U1463_111.653-2.2382.971-0.7622.62979.632-1.81-1.3082.8952.0520.59579.671
154911_A1474A1475:U1457U1458_110.603-2.2413.8451.6319.47429.957-6.053-0.7843.0417.762-3.05731.428
155011_A1475G1476:U1877U1457_111.988-0.6493.8410.91310.24744.613-1.873-2.4663.65213.29-1.18345.725
155211_A1477C1478:G1875U1876_11-0.167-2.2893.296-1.439-1.8126.804-4.442-0.0223.444-3.8953.09726.902
155611_A1481A1859:U1871C1872_113.337-2.9353.967-1.20712.87486.453-2.451-2.453.5559.3540.87787.225
156411_A1491G1492:C1836U1837_110.668-1.7323.143.516-1.90621.029-3.89-0.3693.347-5.161-9.52221.402
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1336366_U1688G1690:C1711G1713_66-1.367-2.7136.562.63428.79368.332-4.0071.3025.18124.556-2.24773.507
1331566_U1758C1759:G1642U1643_661.246-1.4283.0041.1793.35723.748-4.406-2.6532.8358.099-2.84524.009
1336866_U1770U1771:A1790A1791_66-0.565-1.1793.09-2.05311.05427.658-4.3310.722.48122.0054.08629.815
1336966_U1771C1772:G1789A1790_660.891-1.6333.1470.3974.66235.345-3.298-1.4012.9247.637-0.6535.644
1337366_U1775A1776:U1785G1786_660.763-2.0052.5981.0226.44621.121-6.977-1.7131.94117.067-2.70622.095

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.