A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 13-Oct-2021 number of released structures: 11721
Search for released structures

NDB ID: 5TGA  PDB ID: 5TGA 


Base Pair Morphology Step Parameters

CSV Format

Model NumberStep NumberStep NameShiftSlideRiseTiltRollTwistX-DisplacementY-DisplacementHelical RiseInclinationTipHelical Twist
14022_A40A41:U466G467_220.074-0.1023.801-0.2711.54862.18-0.694-0.0843.73211.0790.25963.138
14122_A41A438:G465U466_22-0.2080.3843.729-6.0293.85977.4970.181-0.0293.7483.0774.80677.775
15122_A51G53:C427U440_225.291-0.8656.22-0.6862.956170.877-0.44-2.6566.2151.4830.344170.88
15722_A67G69:U82G83_220.848-0.3633.886-8.3574.10160.048-0.591-1.3113.724.0718.29760.699
15922_A93A399:U395G396_22-1.905-0.412.732-6.424-3.285-6.6116.149-18.4960.4621.654-42.343-9.783
17722_A103C309:G357U358_221.289-1.882.949-4.824-0.10493.75-1.285-0.9612.897-0.0713.30393.845
17622_A105A103:U358C308_223.6-4.69-2.04341.662102.95524.749-0.478-3.105-3.42275.671-30.622112.883
18422_A108G109:C305U306_220.079-0.8763.271-0.22411.40334.0-2.998-0.162.8418.8540.37135.809
18822_A112U113:A301U302_22-0.481-1.9832.9094.43111.49720.343-7.5542.2241.45829.331-11.30523.75
19722_A124U125:G291U293_223.377-1.5223.961-6.92414.22346.779-2.977-4.6142.91117.3428.44349.239
19822_A138G142:A173A266_225.583-2.0174.411-10.9391.27878.512-1.626-4.7523.7071.0068.60479.157
110222_A145U146:A168A169_22-0.769-0.9423.58-24.7664.09233.268-1.843-2.0093.2516.17337.36641.461
110422_A147A148:C166U167_220.624-2.2513.794-0.93112.17150.427-3.467-0.7823.19614.051.07551.79
110522_A148C149:G165C166_224.259-3.0533.642-5.99513.27641.375-5.225-6.2242.00918.1278.18543.758
111122_A182U183:A202U203_220.185-1.2013.028-4.60712.92226.83-4.545-1.1512.17325.8149.20430.077
111722_A188C189:G196A197_220.136-0.3973.389-5.17-8.79458.1240.068-0.4163.389-8.9765.27758.936
112222_A206U207:C258U259_220.803-1.583.568-0.01718.79630.788-5.151-1.3032.26231.9440.0335.953
112622_A210U211:A254U255_220.917-1.7023.6368.7722.73527.061-4.1560.43.5665.642-18.09628.55
112922_A213G214:A251U252_22-0.973-1.3353.2931.94512.63360.244-1.8811.0412.95712.435-1.91461.46
113122_A218U843:A829U830_22-1.275-0.313-4.315158.34424.392-165.3310.197-0.901-4.116-12.20879.251-177.486
113222_A220A221:U840U841_220.227-2.6193.6221.236-8.96625.884-2.772-0.0994.278-19.281-2.65827.395
113322_A221A222:U833U840_22-0.154-0.7582.9530.08614.161-9.898-6.598-0.4582.318-55.2170.337-17.263
113422_A222U223:G838U833_220.188-2.7483.127-4.9043.3668.935-2.536-0.3332.992.9634.32569.159
113722_A225A226:U835U836_22-0.437-1.4173.870.66125.39624.191-6.2560.8281.67947.072-1.22434.942
113822_A226U227:G834U835_220.421-1.2092.5752.669-1.29847.429-1.418-0.3522.624-1.612-3.31447.516
114222_A265U267:A288U289_22-1.83-1.152.9730.1953.73944.783-1.8072.4112.8654.897-0.25644.932
18222_A312A315:A352A353_224.583-0.6283.6735.597-8.10210.7888.155-10.6954.818-34.97-24.15914.597
115022_A316C317:G347U348_22-0.137-1.9593.105-3.5061.28730.074-3.993-0.4033.0162.4686.72430.3
115322_A323U324:A344U345_22-1.03-1.3213.456-3.88624.76338.853-3.7670.9922.34333.355.23345.973
115822_A328G329:C339U340_220.276-1.6573.2670.25.31128.982-4.342-0.5032.92510.501-0.39629.455
116122_A366A367:U374U375_22-0.969-1.5023.168-2.7275.64436.791-3.0541.1742.9758.8634.28337.303
116222_A367U368:G373U374_220.023-1.4653.1190.7325.65342.407-2.5320.0372.917.773-1.00742.771
16022_A399A401:C394U395_22-0.245-1.5643.372-5.6462.1436.303-2.777-0.3983.2783.4068.98536.785
16122_A401G404:C393C394_223.279-1.1683.8042.566-3.87577.993-0.799-2.5183.938-3.077-2.03778.11
16522_A407C408:G389G390_22-1.1091.4092.7077.0417.723-19.201-6.154-0.7082.245-21.23719.361-21.837
16822_A410C411:G422G423_221.307-1.0732.702-5.47612.32423.016-4.608-3.851.58628.01112.44626.63
14222_A438U439:A464G465_22-3.432-3.6862.29316.0824.0759.957-10.9189.985-2.43714.55-57.42319.331
14422_A441C442:G462U463_22-1.001-2.4083.1324.3165.96140.532-4.01.842.6528.52-6.16841.167
15522_A452G63:C87U88_22-2.903-1.9243.0393.8335.68357.73-2.2453.1672.6745.863-3.95558.101
1122_A468G595:C31U32_221.407-2.8393.277-6.42310.42778.79-2.482-1.2612.8438.1685.03279.583
117722_A511A538:G540A477_22-2.65-4.47-4.063-27.51996.42165.672-2.0461.385-4.38748.42213.82170.83
117922_A515G516:C536G537_221.104-0.7633.534-0.6138.13857.144-1.257-1.183.3958.460.63857.675
118122_A518A520:U532U533_22-2.646-0.9783.8265.84935.14849.023-2.8492.9592.39737.25-6.19959.95
118222_A520U522:C531U532_22-0.898-1.4275.32214.27612.8651.713-2.742.2984.50414.198-15.7654.936
118822_A550G557:C587U588_22-1.938-0.7432.9070.112.29546.301-1.1162.472.8642.917-0.1446.355
119522_A567G568:C575G576_220.086-1.3942.5954.74216.39247.251-2.5140.152.03519.714-5.70350.071
1622_A599U600:A26U27_220.932-1.5463.053-7.9954.9925.955-4.277-3.6132.33510.67217.09927.586
1822_A601U602:G23U24_22-0.006-0.9113.413-0.9028.68834.955-2.725-0.1213.10414.1921.47335.996
11122_A604C4:G20U21_22-3.167-0.9585.20330.9483.87156.088-1.1444.8863.1753.81-30.45863.556
120022_A615G616:C1105U1106_22-0.924-1.9323.262-8.237-3.40930.445-2.8680.0723.574-6.32415.27931.694
120222_A622G1032:U1103U1104_221.306-2.9293.51715.1412.3926.611-13.0482.3110.33245.291-55.33620.641
120822_A630G631:U968C969_220.781-1.2823.148-13.842-0.17852.133-1.406-1.672.874-0.19915.44353.816
126622_A746C747:G802U805_223.522-1.4994.84-25.5741.19856.513-1.536-4.9743.1071.19925.6161.604
127222_A760G761:A789U790_22-0.595-0.6613.5836.818-1.27864.723-0.5570.8633.523-1.19-6.34965.053
127422_A774G775:U785C786_221.18-4.842-1.59128.078-104.743-38.1411.109-1.032-4.28155.46467.821-166.256
127722_A814G816:A855U857_224.620.8860.614-117.628105.801153.7270.421-2.337-0.03753.08759.021175.076
121422_A865G866:C962U965_223.008-1.6553.1093.4856.43345.266-2.656-3.5763.0698.293-4.49345.823
121822_A869C870:G957U958_220.352-1.013.263-0.2459.97244.15-2.174-0.4792.97713.0690.32145.208
122922_A881U882:U946U947_221.083-0.7622.613-3.968-8.62743.553-0.365-1.7242.608-11.4655.27344.527
123222_A884G885:C927U928_22-0.041-1.0712.474-2.376-1.59232.401-1.699-0.2442.519-2.8464.24732.524
123522_A887U888:A924G925_220.075-0.8933.123-1.2815.50134.603-2.255-0.3052.9469.1722.13635.047
123922_A891A892:U920U921_22-1.209-0.6163.3830.2795.72433.449-1.992.1183.2279.855-0.4833.922
124022_A892U893:A919U920_220.832-1.5742.90.0839.56423.824-5.699-1.8572.12122.061-0.19125.646
128422_A933U935:G876A944_220.844-3.015-0.297145.81169.669-98.4031.5290.3950.123-35.78774.9-168.008
128822_A971G972:C627A846_214.517-2.4771.44317.04928.7860.294-6.713-6.4190.18477.017-45.61433.457
129022_A973A974:C625U626_22-0.781-1.2762.966-9.8115.52726.865-3.647-0.4082.76411.28620.03629.089
129122_A974C975:G624C625_220.611-2.0263.261-3.5793.21933.096-4.031-1.6292.9755.6146.24233.434
129322_A979G980:C1021C1022_220.15-1.1474.252-2.08313.82352.022-2.357-0.333.84515.4442.32753.741
129722_A983G984:U1017U1018_220.223-1.8772.9976.84424.57821.199-6.1230.3950.60449.041-13.65733.058
130222_A992A993:G1011U1012_22-4.59-0.5743.661-121.699-119.291-117.810.764-2.7831.24260.126-61.339-175.053
130322_A993G994:C1010G1011_220.054-0.6513.283-5.9637.90653.943-1.177-0.4123.1458.6346.51154.777
130522_A995U996:G1008U1009_220.654-1.4943.3596.3562.12935.769-2.7-0.1353.3313.429-10.23736.372
130722_A1036C1037:G1094U1095_221.244-1.4553.4145.5658.68238.081-3.21-1.1713.16413.017-8.34339.403
130922_A1065C1066:G1053U1054_221.137-2.5193.32-6.332.24631.037-5.0-3.192.8544.13611.65931.738
131322_A1069C1070:G1048U1049_22-0.25-1.583.2520.0253.4227.537-4.090.5263.0377.149-0.05327.745
131922_A1076C1077:G1041G1042_221.151-1.2452.961-1.4240.0624.759-2.915-3.0652.8880.1393.31724.8
133022_A1113U1115:A1131A1132_222.489-2.0631.348119.545125.168-166.0940.9731.31.311-62.60259.79-179.163
133222_A1116U1117:U313G1130_22-4.029-2.2872.536-7.3211.56937.114-4.4645.2832.46417.46511.0539.475
11622_A1138U8:U15G16_22-0.4640.1282.6282.773-5.43312.4984.6334.0122.222-23.23-11.85513.902
12022_A1142A1143:A11U12_22-0.054-1.7543.4343.5591.0838.613-2.7790.5343.3671.628-5.36738.785
12122_A1143U1144:G10A11_22-0.868-2.1783.407-0.7560.2428.767-4.4391.573.410.4821.52228.778
12522_A1147C1148:G1629U1630_22-0.251-1.3183.1952.40510.01827.221-4.6150.9782.5320.382-4.89329.071
12822_A1151A1152:U1626U1627_22-1.424-1.2713.391-2.8731.65431.884-2.6142.0373.4343.0015.21332.052
12922_A1152G1153:C1625U1626_22-0.346-1.433.228-1.9982.46930.268-3.2040.2713.124.7113.81430.43
13422_A1157A1160:U1617C1618_223.742-2.0212.821-13.0970.52568.712-1.781-3.632.1540.46111.49869.8
13522_A1160C1161:G1616U1617_220.191-1.3143.5915.84-3.69835.514-1.5320.6173.689-5.993-9.46336.159
134022_A1166G1167:U1578U1579_222.939-2.6924.2925.2021.5028.258-19.978-2.0694.7289.237-31.9889.872
135722_A1203A1556:U1552G1553_220.367-4.02-2.606170.388-49.334131.755-2.14-0.633-1.777-24.699-85.303178.932
137222_A1211G1212:C1451U1452_220.706-1.6643.8111.93116.03528.041-5.5540.8382.60728.905-21.50734.318
137722_A1219C1220:G1263G1264_220.587-0.8343.833-5.389-2.04966.56-0.663-0.7813.803-1.8634.90166.78
137922_A1221C1222:G1261U1262_220.5-1.03.346-0.8018.58430.769-3.347-1.0522.95315.7931.47331.925
138122_A1223A1224:U1259U1260_22-0.414-1.3693.2917.73115.36633.015-4.021.592.30325.037-12.59637.116
138222_A1230U1231:U1254U1257_226.2060.382.3814.89311.46156.032-0.187-5.573.78611.836-15.38158.856
138622_A1234G1245:U1250U1251_22-2.2232.341-0.15593.812138.484-165.241-1.16-1.119-0.242-69.28546.935-178.368
138822_A1236G1237:C1248U1249_220.889-0.8923.7592.24112.0933.058-3.48-1.0983.29320.39-3.77935.21
139622_A1275U1276:A1436C1431_220.833-3.7033.5723.1116.067-23.2182.2422.7324.916-34.9016.756-28.342
141122_A1296G1297:A1300U1301_22-4.6-1.9333.169-0.49518.26457.118-2.7594.5962.53618.5850.50459.734
142322_A1344A1345:U1380U1381_22-0.302-1.0383.2054.0123.05831.575-2.4171.2453.0335.575-7.31531.966
142422_A1345A1348:U1377U1380_221.1761.7185.03518.10410.723104.2110.845-0.3455.256.748-11.394105.703
142522_A1348G1349:C1376U1377_220.245-1.0723.099-10.19514.4124.557-4.57-2.2471.94729.49820.8730.163
143422_A1357G1358:C1365U1366_22-0.684-1.4163.006-0.84817.15826.816-5.1161.1241.81533.041.63231.761
143622_A1388C1389:G1412G1409_22-2.9465.334-2.711-17.3930.74535.1298.0285.687-1.0781.15126.87539.083
135422_A1469C1470:G1574G1170_22-0.3220.2522.9560.9545.73226.868-0.7530.8922.93212.155-2.02427.478
144322_A1471C1472:G1536U1538_221.574-3.3833.233-15.40110.662-74.3422.3910.7743.836-8.691-12.554-76.334
144522_A1475C1476:G1531U1532_220.54-1.1163.0533.564.31841.992-1.952-0.4122.9635.994-4.94242.346
144922_A1479G1480:C1527U1528_22-0.387-1.8953.86811.34517.00133.349-4.9882.0132.41626.734-17.84138.962
145122_A1487G1488:C1518U1519_220.811-1.3622.241-19.768-10.83229.525-1.145-3.1081.766-18.27433.35136.993
135822_A1556U1560:U1551U1552_223.5262.906-1.181161.36131.095.1491.214-0.4663.95516.96-88.027164.344
136822_A1569A1570:G1541G1542_22-0.158-0.1832.936-7.66710.65732.306-1.764-0.7852.7118.24113.12334.805
136922_A1570C1571:G1540G1541_220.607-0.8983.303-10.523.55466.288-0.95-0.9563.143.2269.55167.107
146022_A1586A1587:U1609G1610_220.041-0.3723.5623.1641.15762.282-0.4170.1173.5531.118-3.05662.364
146122_A1587G1588:U1608U1609_22-0.229-1.5713.366-3.39318.4331.845-4.777-0.0582.17830.5145.61736.826
146622_A1592A1593:U1603U1604_220.407-1.0623.789-0.9613.95542.002-1.94-0.6783.6695.5021.33742.19
146722_A1593G1594:C1602U1603_22-0.798-1.6332.9122.4182.70134.367-3.111.6662.7194.556-4.07934.552
147022_A1719G1720:A1681U1682_220.461-0.7652.7865.62125.711103.473-0.774-0.2252.62716.199-3.541105.827
147222_A1721A1722:G1679G1680_22-0.67-0.3482.9861.8137.12225.75-2.41.8672.7415.581-3.96626.762
147322_A1722U1723:A1678G1679_221.905-1.0583.503-3.5978.07366.15-1.295-1.8813.2747.3623.2866.672
147922_A1728C1729:G1672G1673_220.923-0.9583.231-5.8680.17529.547-1.879-2.9272.990.33811.36430.112
148122_A1730A1731:G1670A1671_220.384-2.3533.2919.0066.545-28.4713.0782.6433.457-12.7117.489-30.528
148222_A1731A1732:U1669G1670_220.522-0.7923.527-5.4963.57759.308-0.988-0.8183.4223.6035.53659.637
148322_A1732C1733:G1668U1669_22-0.761-1.3613.091-3.5461.72536.217-2.4030.7523.0842.7655.68336.424
149122_A1740U1741:A1660U1661_220.821-1.4563.2740.5624.30428.726-3.821-1.5163.0438.613-1.12529.046
149522_A1744G1745:A1655U1656_22-1.818-0.9443.6417.37311.15759.835-1.492.1583.21411.036-7.29361.176
149722_A1746G1747:C1653G1654_221.701-0.5133.774-8.6215.47558.095-1.343-2.1523.29615.5458.65960.509
150022_A1749A1750:U1650A1651_22-0.451-1.9673.183-3.1231.7313.198-9.907-1.0772.9287.35113.27313.67
150122_A1750C1751:G1649U1650_220.593-1.2463.1053.0992.63934.96-2.431-0.5463.0464.375-5.13735.189
150422_A1753A1754:C1646U1647_221.9941.9131.002150.243-86.037112.6861.128-0.71.266-43.304-75.62176.196
150522_A1754A1756:G1645C1646_223.7921.5552.323-87.778108.044-160.063-0.9321.7752.485-54.242-44.068-173.083
150622_A1756G1757:C1644G1645_220.081-2.472.819-5.84228.40936.683-4.631-0.4110.78238.617.9446.452
151122_A1762A1763:C1639C1640_22-0.784-0.9863.381-7.127-2.53347.817-0.9950.3723.502-3.1038.72948.377
151222_A1763C1764:G1638C1639_22-1.036-1.1383.4033.1695.23644.085-1.9911.6633.1766.935-4.19844.487
152522_A1776G1777:C1784U1785_220.019-1.1643.1525.2611.06733.555-3.3650.6642.62318.423-8.75635.662
151822_A1802G1803:C1824A1825_22-0.613-1.9023.545-7.54514.88-37.8980.811-1.8263.818-21.674-10.99-41.284
11222_C4U5:A19G20_22-0.505-1.6713.0363.2090.36130.892-3.1851.5092.950.675-6.00431.056
13822_C36U37:A471U472_22-0.244-2.1093.561-9.9322.85924.207-5.459-2.323.1486.45422.4226.29
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1224988_G39A40:A105A104_88-2.296-3.6793.88115.481-8.264-129.5792.1-1.133.8924.5598.541-130.209
1225288_G42A43:U101U102_88-0.339-2.3793.58-5.0636.72828.557-6.074-0.4232.96913.2799.99329.748
1225688_G46C47:G56C57_88-0.317-1.7663.171.329-0.75933.767-2.9190.7533.194-1.305-2.28733.801
1336688_G49C50:G75C76_880.443-1.3433.267-2.5023.31136.605-2.564-1.0343.1025.253.96736.831
1336788_G63U64:A96A97_88-0.617-2.6283.441-5.8916.08233.402-5.3870.1262.99310.37610.0534.429
1337288_G68U69:A89C91_881.044-1.5423.029-4.0911.72924.082-4.111-3.5832.7014.0989.69824.482
1337488_G70A71:G87A88_88-0.275-2.2184.77-5.401-7.411-11.18817.085-7.122.4631.88-23.231-14.456
1337588_G114C115:G107C108_88-0.039-2.163.33-4.496-8.22140.104-2.108-0.4733.668-11.7956.45141.14
1337788_G116C117:G136C137_881.03-1.9593.124-2.2422.76631.005-4.125-2.3062.8635.1524.17731.204
1338488_G123G124:C129C130_880.316-1.6343.0795.8559.94933.075-4.0410.2522.51616.85-9.91734.978
1226785_U26C339:G25G337_850.1573.1761.169-153.03476.5933.1471.051-1.1611.31340.22780.373171.135
1226688_U27U26:G337A336_55-0.4861.317-2.364-10.828-8.003-30.851-3.1960.401-2.02314.225-19.245-33.596
1226488_U29C28:G335A334_55-0.6491.306-2.947-8.152-3.58-37.49-2.382-0.069-2.8885.475-12.468-38.495
1336888_U64A65:C94A96_883.939-2.1763.008-15.3977.95728.033-4.582-8.3870.25114.77528.58932.867
1337188_U67G68:C91A92_88-0.743-1.6043.0747.5294.6241.472-2.6431.7162.7196.437-10.48942.361
1337388_U69G70:A88A89_880.3441.5092.7994.10413.01964.4550.911-0.1663.03612.065-3.80365.732
1338288_U121U122:A131G132_880.203-2.5422.9760.05811.74824.327-7.659-0.4251.59826.026-0.12826.977
1338388_U122G123:C130A131_88-0.413-1.9732.6855.4312.48322.362-5.5872.4922.2926.259-13.69223.136

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.