A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 13-Oct-2021 number of released structures: 11721
Search for released structures

NDB ID: 5TGM  PDB ID: 5TGM 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
1422_A40:G467_2-6.795-3.8950.8912.821-17.2191.691
1432_A41:U466_2-0.6710.28-0.141.783-32.758.701
1612_A51:U440_2-0.0671.527-0.6842.118-7.275159.498
1692_A67:G83_2-6.899-5.052-0.3640.271-14.766-11.232
1802_A103:U358_2-4.035-2.427-1.18122.342-6.997-96.244
1882_A108:U306_2-0.841-0.1710.1028.528-9.3169.03
1922_A112:U302_20.5830.538-0.366-51.325-2.7840.274
1972_A119:C298_2-6.176-4.205-0.1959.2536.151-33.347
11022_A124:U293_20.292-0.117-0.25-8.101-18.4355.605
11042_A126:G291_2-6.604-3.829-1.33119.118-15.7150.605
11052_A138:A266_2-1.394-3.37-0.092-14.15718.45893.299
11092_A145:A169_24.232.061-0.137-15.58511.518-114.784
11112_A147:U167_2-4.561-2.5961.2434.23517.759-88.23
11122_A148:C166_2-2.684-0.066-1.63118.97-35.764-83.963
11192_A182:U203_2-0.117-0.084-0.86414.992-19.085-2.982
11252_A188:A197_2-5.899-3.897-1.062-17.623-1.469-15.473
11302_A206:U259_20.339-0.311-1.19112.467-27.5220.78
11342_A210:U255_20.354-0.19-0.6115.597-14.0880.426
11372_A213:U252_20.893-0.151-0.748-12.5035.522-0.861
11412_A236:U229_2-1.3340.165-0.42210.86-22.635-28.908
11532_A265:U289_2-0.672-0.0570.051-11.844.12911.733
1852_A312:A353_24.2761.199-1.248-3.694-8.003-96.862
1862_A315:A352_2-5.576-4.4522.18-17.75437.6440.645
11612_A316:U348_20.183-0.23-0.7283.16228.6882.531
11642_A323:U345_2-0.0970.4350.23315.518-16.30810.983
11692_A328:U340_21.001-0.1590.449-8.062-10.2660.963
11732_A366:U375_2-0.884-0.0740.55-15.047-10.8174.994
11742_A367:U374_2-0.0360.0760.5-9.857-2.9440.37
11772_A399:U395_2-3.827-1.6810.453-1.0413.643-89.709
11782_A401:C394_2-3.126-0.058-0.70226.144-7.794-99.95
11822_A407:G390_21.1653.8890.5554.139-9.647-84.377
11852_A410:G423_20.0081.481-0.396-32.148-23.69-18.646
1542_A437:U45_2-3.955-6.136-0.442-33.50220.017-174.527
1452_A441:U463_2-0.6230.0090.01619.439-7.6152.986
1482_A446:C444_2-3.7820.038-0.43712.372-20.37652.902
1652_A452:U88_20.118-0.210.09-5.316-5.6350.965
112_A468:U32_2-3.887-1.411.16-3.87915.257-91.905
11962_A505:A481_2-2.7782.923-0.46-44.102-25.847-86.002
12002_A511:A477_2-1.571.36-0.019-8.065-5.271-22.703
12042_A515:G537_2-6.823-4.099-0.941-3.557-6.8990.416
12072_A520:U532_21.001-0.041-0.78-8.846-15.2654.491
12012_A538:G540_23.0562.937-1.4964.82956.3778.525
12142_A550:U588_20.006-0.2730.428-19.052-1.1270.277
162_A599:U27_21.342-0.202-0.54-5.089-2.455-0.606
182_A601:U24_20.434-0.205-1.591-9.45-30.1571.563
1112_A604:U21_20.4350.05-1.486-34.994-23.025.145
12292_A615:U1089_2-0.0310.026-0.431-10.853-12.1575.632
12312_A622:U1087_20.527-0.228-0.338-16.6155.287.932
12442_A630:C952_2-5.956-4.121-2.016-13.797-21.519-27.01
13002_A689:A717_20.844-1.9152.46324.48551.454100.516
13012_A690:G713_2-3.1741.662-0.60438.929-14.232-8.138
13092_A729:U788_20.4950.172-0.461-31.151-26.139-1.418
13142_A735:G780_2-0.131.8640.122-32.001-17.615-18.071
13152_A743:U773_21.059-0.241-0.332-1.836-12.8568.693
13202_A757:C769_20.214-0.8211.68514.9511.754147.342
13242_A797:U840_20.2091.2341.32120.45825.782151.894
13252_A800:U837_2-0.838-0.0920.2087.845-8.36-1.404
12512_A848:U948_21.050.0060.15417.8464.907-5.53
12552_A852:U941_2-4.04-0.2070.92514.4229.66-5.62
12662_A864:U930_2-0.736-0.2710.2063.03-14.0597.963
12692_A867:U911_2-0.814-0.087-0.582-25.695-15.4995.058
12722_A870:G908_2-0.3411.2910.383-11.656-6.387-21.373
12762_A874:U904_2-0.7910.061-0.764-1.389-17.627-0.359
12772_A875:U903_20.2690.058-0.692-0.147-9.0631.125
13302_A881:G897_2-6.55-4.014-0.104-21.90424.075-7.189
13322_A883:U892_20.6210.062-1.692-21.566-16.5113.483
13332_A916:A927_21.610.4070.75615.313-13.874-173.79
12382_A957:C625_2-2.163-0.164-0.856-26.263-3.7033.707
13382_A960:U1007_2-3.712-1.741-1.815-4.858-24.881-87.056
13392_A962:C1005_2-6.376-1.0450.81824.957-19.6799.872
13432_A966:U1001_20.287-0.348-0.607-9.099-21.9648.663
13492_A975:U995_2-0.446-2.7650.563-13.2813.619-161.848
13502_A976:G994_2-7.037-3.786-0.205-1.345-7.654-8.179
13522_A978:U992_20.166-0.208-0.072.911-9.1417.748
13572_A1019:U1078_20.732-0.170.2558.266-22.2541.463
13602_A1048:U1037_20.5880.1910.32715.52-4.319-8.776
13642_A1052:U1032_20.3140.008-0.897-23.39-13.5273.878
13712_A1059:G1025_20.061.508-0.1352.532-4.606-9.36
13772_A1067:U1072_20.656-0.303-1.396-9.818-0.6771.091
13842_A1096:A1115_26.295-5.32-0.33526.0937.509177.586
13862_A1099:G1113_2-6.892-3.789-0.339-3.261-6.0312.501
1162_A1121:G16_2-6.856-4.3860.2576.34712.4070.64
1172_A1122:U8_2-0.522-3.160.911-17.9227.53661.743
1202_A1125:U12_2-0.2150.262-0.5871.11-4.281.286
1212_A1126:A11_23.0441.186-1.303-8.814-3.18813.082
1252_A1130:U1613_2-0.689-0.1410.3391.2924.0332.341
1282_A1134:U1610_20.31-0.028-0.299-17.316-9.1439.614
1292_A1135:U1609_20.9210.022-0.726-26.695-17.268-6.521
1342_A1140:U1604_2-0.836-0.0690.27115.4-6.898-6.717
1362_A1143:U1600_2-0.483-0.1950.8286.951-6.849-4.695
14162_A1186:G1536_2-2.9634.04-0.488-25.188-11.79676.322
14282_A1194:U1435_2-0.295-0.1420.359-0.111-2.5382.183
14342_A1202:G1247_2-7.306-4.627-0.1524.424-17.799-11.242
14362_A1204:U1245_2-1.216-0.192-0.0833.687-12.655-4.634
14382_A1207:U1242_20.6740.001-0.299-37.994-47.051-0.352
14402_A1213:U1240_2-0.657-0.218-0.353.7913.921-3.728
14442_A1217:U1234_2-0.341-0.228-0.821-1.12129.654-3.825
14462_A1219:U1232_2-0.660.002-0.85114.396-1.507-10.976
14482_A1221:U1230_20.516-0.0430.468-10.986-18.00110.912
14562_A1258:C1414_2-2.95-0.3891.477-11.92837.669-97.092
14722_A1279:U1284_2-0.065-0.443-0.292-2.2119.219-8.939
14812_A1319:U1398_20.5560.1650.51-23.982-10.725-12.72
14862_A1327:U1364_20.6910.5650.99328.302-39.3814.416
14872_A1328:U1363_20.052-0.0021.52632.997-25.331-0.591
14882_A1331:U1360_2-0.168-0.053-1.247-38.1-13.052-1.842
14972_A1340:U1349_2-1.557-0.7171.244-3.271-4.80.912
15002_A1371:G1392_2-3.6424.0170.025-15.6472.07966.269
15022_A1374:U1390_20.260.109-0.25110.296-4.251-17.247
14822_A1393:G1370_2-3.1563.7641.686-9.23-14.50672.553
14112_A1452:G1153_2-1.3481.8720.047-20.814-1.594-4.759
15082_A1454:U1521_2-3.75-1.64-1.047-4.018-27.285-100.227
15112_A1458:U1515_2-1.07-0.1550.77819.462-9.508-8.675
15152_A1462:U1511_20.785-0.03-0.28-18.208-18.5077.328
15192_A1470:U1502_2-0.285-0.569-2.08-12.358-17.592-15.035
15332_A1539:U1581_2-3.0022.969-0.486-25.693-19.23977.642
15352_A1569:G1593_2-6.634-4.7770.913-14.271-3.648-2.356
15362_A1570:U1592_20.0330.0810.6985.8584.497-5.114
15412_A1575:U1587_20.243-0.5760.6377.098-22.158-11.236
15422_A1576:U1586_2-0.1750.3940.013-14.016-35.25318.918
15452_A1702:U1665_20.298-0.431-1.105-13.999-11.3352.612
15472_A1704:G1663_2-6.392-4.5350.509-13.94215.451-5.241
15482_A1705:G1662_2-6.306-4.173-1.1631.137-12.748-6.459
15542_A1711:G1656_20.5131.151-0.111-26.02-18.851-17.967
15562_A1714:G1653_2-6.739-4.37-0.134-2.316-14.414-4.727
15572_A1715:U1652_2-0.195-0.221-0.059-6.883-10.3153.218
15652_A1723:U1644_20.5570.0850.022-14.049-12.0379.849
15692_A1727:U1639_2-0.2020.0170.964-9.91432.62419.901
15712_A1729:G1637_2-6.765-4.771-0.6240.422-4.129-14.098
15742_A1732:A1634_21.9511.82-0.272-1.991-7.83618.456
15752_A1733:U1633_20.723-0.1950.002-5.985-18.929-9.682
15782_A1736:U1630_20.710.4020.4953.489-30.63717.901
15792_A1737:C1629_2-0.233-0.554-0.68930.033-7.274178.793
15802_A1739:G1628_21.1671.162-0.40532.518-14.865-13.387
15852_A1745:C1623_2-6.447-2.298-1.22-9.746-6.69434.867
15862_A1746:C1622_2-3.214-0.42-0.588-2.088-17.71613.612
15992_A1759:U1768_20.636-0.175-0.657-6.287-3.0418.982
1122_C4:G20_2-0.056-0.009-0.58425.384-31.982.091
1392_C36:U472_20.476-1.483-0.737-2.6454.048-0.244
1412_C38:A470_24.167-0.464-1.229-19.10412.01118.225
1562_C49:G430_20.59-0.4690.492-13.9088.358-2.179
1572_C50:G429_20.1810.12-0.389-4.326-11.13113.036
1602_C54:G426_20.542-0.41-0.13828.79-16.15-3.365
1712_C70:G81_21.110.091-0.02613.597-39.5368.656
1732_C97:G386_2-0.388-0.285-0.476.749-20.8711.661
1752_C99:G384_21.004-0.162-0.2613.44-16.957-5.839
1872_C107:G307_20.047-0.175-0.134-6.705-9.967-4.295
1962_C114:U245_2-2.9752.4510.091-14.757-15.90672.491
11132_C149:G165_2-0.342-0.1820.44312.886-16.41-0.373
11212_C184:G201_2-0.514-0.0820.3216.779-17.50.534
11232_C186:G199_2-1.307-0.286-0.56-32.189-1.681-3.347
11262_C189:G196_20.768-0.486-0.698-9.0826.84-6.399
11272_C191:U193_23.194-0.1651.29831.87913.82565.276
11422_C237:G228_21.519-0.7580.7850.597-31.657-3.971
11552_C268:G287_20.146-0.477-1.8960.658.588-5.661
11562_C270:G285_2-0.608-0.085-0.72321.146-6.748-0.868
11602_C276:G279_22.386-0.588-0.93618.6241.7068.766
1812_C309:G357_20.5850.207-0.2746.339-9.28817.246
1822_C310:G356_20.287-0.128-0.7882.6335.743-0.156
1842_C314:C354_21.846-1.632-0.9470.5281.8329.248
11622_C317:G347_2-0.305-0.264-1.4387.268-6.751.848
1762_C361:G383_20.553-0.279-0.71514.506-12.1491.171
11802_C405:G392_20.250.054-0.86229.283-36.4546.496
11832_C408:G389_20.901-0.173-0.53626.425-23.018-2.615
11842_C409:G388_20.4-0.184-0.295-2.9192.627-4.296
11862_C411:G422_20.1760.2910.5910.805-23.99213.649
11882_C414:G419_21.052-0.6740.4166.921-8.3353.262
11892_C415:G418_20.417-5.108-0.07-6.6141.682-110.826
1462_C442:G462_20.88-0.529-0.381.4514.0443.353
1472_C443:G461_2-0.431-0.2730.513-6.135-5.8183.355
1502_C448:G458_2-0.1890.01-0.249-6.104-2.6499.133
1512_C449:G457_20.588-0.3610.087-4.452-8.5881.457
12022_C491:G496_2-1.5180.8350.192-0.7591.88217.037
11922_C500:G487_2-1.3170.277-0.5256.494-48.592-6.454
12062_C519:U533_2-7.265-5.177-0.825-3.007-25.532-29.983
12232_C554:G571_20.2492.7621.059-1.37764.806-105.051
12162_C559:G586_20.912-0.484-0.8953.771-6.9955.453
12252_C569:G574_20.728-0.287-0.44216.164-14.8727.812
132_C596:G30_21.1740.086-1.5258.284-5.111.197
12282_C614:G1090_2-0.626-0.0750.63513.481-1.78-5.813
12412_C627:G955_2-0.231-0.055-0.249-5.646-24.3690.691
12842_C644:G673_2-1.1120.402-0.89411.348-4.7216.565
12852_C645:G672_2-0.5470.059-0.02410.168-10.8086.855
12862_C646:G671_2-0.7990.370.3578.008-7.65612.064
12922_C654:U662_2-0.60.62-0.84311.233-39.256-45.801
12962_C683:G721_2-1.053-0.0340.4036.637-34.543-3.969
13052_C700:G705_24.076-0.0820.572-16.184-21.24638.664
13102_C730:G785_2-0.798-0.1810.45810.272-3.052-0.75
13232_C760:G766_20.371-0.506-1.062-25.296.39-5.68
13292_C810:G828_21.256-0.2940.492-5.263-5.0116.16
12562_C853:G940_20.9630.142-0.17321.912-26.53914.823
12602_C857:G936_2-0.4750.0360.471-18.9877.715-1.604
12652_C863:G931_20.0740.091-0.70721.134-26.266-3.069
12682_C866:U928_20.168-1.613-0.011-1.114-23.08713.361
12752_C873:G905_2-0.159-0.079-0.40118.003-3.878-3.045
13362_C920:G925_20.577-0.1730.274.41-1.6070.56
12392_C958:G624_20.671-0.448-0.16210.9932.132-5.815
13472_C973:G997_2-0.113-0.3040.40512.064-8.8481.096
13562_C1011:G1775_20.965-0.326-0.18912.56919.565-2.009
12332_C1016:G1085_2-0.3520.173-0.77511.35-1.14811.594
12342_C1017:G1084_20.357-0.426-0.6448.6843.113-5.101
13582_C1020:G1077_2-0.105-0.0970.8364.081-22.1267.999
13612_C1049:G1036_20.623-0.526-0.4315.057-11.845-0.333
13622_C1050:G1034_20.516-0.145-0.351-12.61111.546-1.996
13632_C1051:G1033_2-0.1210.232-1.44621.24-27.6043.627
13652_C1053:G1031_21.229-0.217-0.576-2.307-10.4340.976
13672_C1055:G1029_2-0.535-0.367-0.9546.865-14.439-2.906
13702_C1058:A1026_2-2.4670.7420.243-15.075-8.454-15.122
13722_C1060:G1024_2-1.4140.6130.15423.243-13.3999.451
13732_C1061:G1023_2-0.3270.441-0.04824.61-18.66617.841
13912_C1104:G1109_20.364-0.052-0.2912.728-12.88210.182
1262_C1131:G1612_21.022-0.3530.583-2.478-1.9022.392
1332_C1139:G1605_2-0.522-0.194-0.13213.977-14.255-3.661
13962_C1141:A1146_2-0.4512.0910.281-36.38628.221-167.401
1372_C1144:G1599_20.624-0.2590.541-4.607-25.268-0.559
14262_C1192:G1437_2-0.135-0.226-1.04226.111-19.4331.788
14272_C1193:G1436_2-0.05-0.073-0.8582.2315.919-2.862
14322_C1198:G1431_20.311-0.3980.647-2.582-10.5320.282
14332_C1199:A1429_23.439-0.974-1.2753.253-4.064-87.874
14352_C1203:G1246_2-1.2660.104-0.65522.038-8.12-2.707
14372_C1205:G1244_2-1.0150.2540.581-0.481-14.14611.211
14602_C1262:G1412_20.4050.0670.537-4.74-9.2475.245
14612_C1263:G1411_21.258-0.2230.756-0.939-1.99911.553
14732_C1289:G1301_20.5040.001-0.447-14.12815.921-0.499
14752_C1292:G1299_20.975-0.304-1.25118.494-17.966.579
14772_C1315:G1402_20.973-0.090.55630.219-18.434-4.358
14782_C1316:G1401_2-0.769-0.3450.5952.391-7.95-8.789
14832_C1321:G1369_20.304-0.1690.14222.833-15.9731.267
14842_C1322:G1368_2-0.015-0.578-1.06625.366-6.772-15.118
14852_C1325:G1366_20.42-0.142-0.84710.304-12.5396.803
14952_C1338:G1351_20.305-0.030.4855.2260.3487.292
14992_C1342:G1347_20.894-0.303-0.7130.691-14.376-5.882
15012_C1372:G1395_20.1740.1850.129-21.785-0.611-1.798
15042_C1376:G1388_2-1.011-0.0890.08711.633-5.8434.045
14022_C1442:G1162_20.689-0.6511.574-16.5314.739-3.115
14032_C1444:G1161_2-0.73-0.054-0.91614.468-3.538-0.842
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137247_G65:C15_7-1.161-0.304-0.7380.927-16.725-0.904
137267_G67:U111_7-2.22-0.6870.1415.06911.874-8.271
137307_G71:C107_7-1.284-0.5920.6724.683-17.2894.025
137337_G75:A104_76.53-3.9780.551-18.848-16.836-6.103
137377_G80:C100_7-0.316-0.808-0.455-6.913.135-13.254
137397_G82:C98_7-0.295-0.6380.1793.821-6.959-2.698
137427_G85:A95_7-0.3171.727-0.4559.509-16.256-6.159
137437_G87:C94_7-0.241-0.239-0.0321.1645.6480.093
137447_G88:C93_7-0.337-0.114-0.1170.076-5.3575.115
137457_G89:A92_77.531-5.5510.47428.42611.597-42.086
137027_U3:A118_7-0.9030.0220.0280.38-20.5198.358
137037_U4:A117_70.279-0.012-0.61117.27-11.90610.62
137147_U31:A46_70.9480.06-0.477-8.146-6.58310.545
137157_U32:A45_70.118-0.093-0.515-12.59115.358-6.919
137187_U38:A42_76.819-4.003-0.024-20.30222.1465.412
137207_U59:A20_7-0.009-0.1130.922-13.23-15.4851.957
137237_U62:A17_7-0.608-0.0040.29-1.272-16.77914.206
137297_U70:A108_7-1.096-0.122-0.189-0.475-4.7293.19
137357_U78:A102_74.399-1.853-1.24910.095-19.718-109.173
137387_U81:G99_71.699-0.7050.381-1.7410.807-2.08
137407_U83:A97_7-0.5-0.0660.16-7.035-21.90814.815
125328_A33:G330_5-0.2151.363-0.481-4.226-0.476-21.969
125178_A37:C106_81.379-4.7510.76-21.175-22.14559.842
125198_A40:A105_85.358-5.5180.50127.4121.82173.106
125208_A41:G103_8-6.625-4.0370.05519.259-20.8674.404
125228_A43:U101_8-0.4-0.11.0918.253-7.06610.114
125238_A44:U100_80.793-0.184-0.505-24.683-1.61-0.095
137508_A65:C94_8-5.292-0.5561.66325.812-15.70820.544
137518_A66:U93_8-0.719-0.0960.2616.703-33.82314.318
137568_A71:G87_8-6.615-4.157-0.838-44.62210.742-3.48
137578_A72:G78_80.7462.241-0.5850.823.988-44.022
125378_C28:G335_5-0.2890.097-0.69119.495-4.601-11.325
125358_C30:G333_50.611-0.171-0.18511.146-6.6267.814
125338_C32:G331_51.404-0.0730.065-7.547-18.5623.896
125248_C45:G58_8-0.293-0.1910.338-8.57-3.327-7.4
125268_C47:G56_8-0.335-0.151-0.287-5.306-3.7750.991
137478_C50:G75_80.53-0.002-0.2126.2094.592.164
125278_C62:U55_80.427-1.971-0.7773.819-25.51911.841
137588_C83:A80_8-4.299-3.237-0.82337.0346.02146.826
137608_C115:G107_80.18-0.344-0.41512.464-4.287-1.614
137628_C117:G136_80.5870.11-0.13213.788-12.0656.964
137638_C118:G135_81.16-0.506-0.94.735-2.113-0.921
137648_C119:G134_80.3390.013-0.1040.9372.688-1.332
137658_C120:G133_81.154-0.403-0.6199.112-2.9865.112
125348_G31:C332_50.063-0.414-0.285-7.879-7.201-0.633
125188_G39:A104_86.177-4.610.80821.96240.2343.517
125218_G42:U102_8-1.618-0.786-1.1051.372-14.676-0.976
125258_G46:C57_8-0.3340.139-0.681-3.629-20.8355.924
137468_G49:C76_80.1-0.13-0.768-14.15-7.0-1.61
125288_G51:A53_83.104-7.2921.161-5.36523.036130.364
137488_G63:A97_81.0591.289-0.26832.756-16.146-6.779
137538_G68:C91_80.928-0.2070.805-10.481-15.2051.482
137558_G70:A88_86.324-4.3382.35128.826-17.5018.733
137598_G114:C108_8-1.04-0.4890.92.541-2.8753.041
137618_G116:C137_80.9470.001-0.904-6.299-11.406-0.647
137688_G123:C130_8-1.064-0.583-0.351-2.377-2.258-4.801
137698_G124:C129_80.6730.007-0.91-14.5085.9515.462
125398_U26:G337_51.902-0.7280.451-1.541-10.8710.69
125388_U27:A336_50.1560.28-0.01822.526-13.3459.348
125368_U29:A334_50.628-0.373-0.85818.386-8.563-5.554
137498_U64:A96_8-0.95-0.05-1.24929.799-6.035-0.36
137528_U67:A92_80.06-0.4111.419-8.033-5.5652.81
137548_U69:A89_80.557-0.480.33910.008-1.6331.827
137668_U121:G132_82.269-0.3740.677-16.917-15.3864.652
137678_U122:A131_80.4040.130.4599.184-10.6386.682

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.