A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 20-Sep-2017 number of released structures: 9123
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NDB ID: 5TXX  PDB ID: 5TXX 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
16T_DA7:DT3_P0.073-0.1690.3711.535-15.3661.831
11T_DC1:DG4_D0.085-0.1040.352-7.571-9.934-0.454
14T_DC4:DG1_D0.393-0.096-0.21113.2451.3160.016
17T_DC8:DG2_P0.328-0.179-0.19413.511-15.0390.763
12T_DG2:DC3_D0.2620.0420.4044.072-11.621-1.441
13T_DG3:DC2_D-0.225-0.1730.2741.958-9.035-2.133
18T_DG9:DC1_P-0.096-0.1190.063-3.447-11.297-0.994
15T_DT6:DA4_P0.063-0.191-0.0216.7771.7853.796

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.