A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 20-Sep-2017 number of released structures: 9123
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NDB ID: 5TYG  PDB ID: 5TYG 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
15T_DA5:DT5_P0.153-0.226-0.109-13.2679.0191.201
17T_DA7:DT3_P0.143-0.140.35411.757-14.250.297
11T_DC1:DG4_D0.041-0.210.445-11.466-12.958-2.426
14T_DC4:DG1_D0.322-0.114-0.20812.7591.362-0.697
18T_DC8:DG2_P0.328-0.165-0.19112.62-10.9940.071
12T_DG2:DC3_D0.132-0.0430.3382.651-10.8091.228
13T_DG3:DC2_D-0.206-0.1850.191-0.436-8.534-2.477
19T_DG9:DC1_P-0.08-0.1620.119-3.286-9.38-2.25
16T_DT6:DA4_P-0.101-0.108-0.0639.0122.5321.594

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.