5TYW: Base Pair Morphology Parameters

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As of 17-Aug-2022 number of released structures: 12237

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NDB ID: 5TYW PDB ID: 5TYW

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	5	T_DA5:DT5_P	0.028	-0.24	-0.232	-19.356	7.853	0.383
1	7	T_DA7:DT3_P	0.091	-0.154	0.353	11.06	-14.343	0.933
1	1	T_DC1:DG4_D	-0.108	-0.279	0.285	-9.888	-11.063	-3.946
1	4	T_DC4:DG1_D	0.405	-0.075	-0.282	16.065	-0.635	-0.276
1	8	T_DC8:DG2_P	0.32	-0.179	-0.224	12.046	-10.615	0.863
1	2	T_DG2:DC3_D	0.131	0.15	0.339	1.937	-14.318	3.185
1	3	T_DG3:DC2_D	-0.238	-0.199	0.188	0.29	-9.218	-2.859
1	9	T_DG9:DC1_P	-0.097	-0.188	0.134	-3.534	-9.606	-1.791
1	6	T_DT6:DA4_P	-0.063	-0.15	-0.065	7.221	2.474	3.023

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.