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A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 26-Jan-2023 number of released structures: 12597
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NDB ID:
5TYW
PDB ID:
5TYW
 
Base Pair Morphology Parameters
CSV Format
Model Number
Pair Number
Pair Name
Shear
Stretch
Stagger
Buckle
Propellor
Opening
1
5
T_DA5:DT5_P
0.028
-0.24
-0.232
-19.356
7.853
0.383
1
7
T_DA7:DT3_P
0.091
-0.154
0.353
11.06
-14.343
0.933
1
1
T_DC1:DG4_D
-0.108
-0.279
0.285
-9.888
-11.063
-3.946
1
4
T_DC4:DG1_D
0.405
-0.075
-0.282
16.065
-0.635
-0.276
1
8
T_DC8:DG2_P
0.32
-0.179
-0.224
12.046
-10.615
0.863
1
2
T_DG2:DC3_D
0.131
0.15
0.339
1.937
-14.318
3.185
1
3
T_DG3:DC2_D
-0.238
-0.199
0.188
0.29
-9.218
-2.859
1
9
T_DG9:DC1_P
-0.097
-0.188
0.134
-3.534
-9.606
-1.791
1
6
T_DT6:DA4_P
-0.063
-0.15
-0.065
7.221
2.474
3.023
The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures',
Nucleic Acids Res
.
31(17)
, 5108-21. Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures',
Nat Protoc
.
3(7)
, 1213-27.