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A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 26-Jan-2023 number of released structures: 12597
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NDB ID:
5TYW
PDB ID:
5TYW
 
Base Pair Morphology Step Parameters
CSV Format
Model Number
Step Number
Step Name
Shift
Slide
Rise
Tilt
Roll
Twist
X-Displacement
Y-Displacement
Helical Rise
Inclination
Tip
Helical Twist
1
4
TT_DA5DT6:DA4DT5_PP
0.639
-0.277
2.798
-4.207
9.421
19.951
-3.57
-2.919
2.258
25.136
11.224
22.437
1
6
TT_DA7DC8:DG2DT3_PP
-0.478
-1.327
3.379
2.686
3.365
36.037
-2.606
1.147
3.203
5.416
-4.322
36.285
1
1
TT_DC1DG2:DC3DG4_DD
-0.388
0.798
3.238
2.031
3.585
34.919
0.786
0.944
3.274
5.949
-3.37
35.154
1
7
TT_DC8DG9:DC1DG2_PP
-0.817
-1.345
3.566
-6.175
5.942
35.428
-3.044
0.381
3.393
9.592
9.968
36.418
1
2
TT_DG2DG3:DC2DC3_DD
0.385
-0.025
3.394
-1.908
4.836
35.275
-0.767
-0.915
3.336
7.928
3.128
35.644
1
3
TT_DG3DC4:DG1DC2_DD
0.513
0.146
2.988
5.135
1.042
26.743
0.067
0.104
3.035
2.226
-10.968
27.243
1
5
TT_DT6DA7:DT3DA4_PP
0.109
-1.263
3.186
-5.12
2.922
28.501
-3.123
-1.285
2.98
5.855
10.261
29.092
The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures',
Nucleic Acids Res
.
31(17)
, 5108-21. Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures',
Nat Protoc
.
3(7)
, 1213-27.