5TYW: Base Pair Morphology Step Parameters

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NDB ID: 5TYW PDB ID: 5TYW

Base Pair Morphology Step Parameters

CSV Format

Model Number	Step Number	Step Name	Shift	Slide	Rise	Tilt	Roll	Twist	X-Displacement	Y-Displacement	Helical Rise	Inclination	Tip	Helical Twist
1	4	TT_DA5DT6:DA4DT5_PP	0.639	-0.277	2.798	-4.207	9.421	19.951	-3.57	-2.919	2.258	25.136	11.224	22.437
1	6	TT_DA7DC8:DG2DT3_PP	-0.478	-1.327	3.379	2.686	3.365	36.037	-2.606	1.147	3.203	5.416	-4.322	36.285
1	1	TT_DC1DG2:DC3DG4_DD	-0.388	0.798	3.238	2.031	3.585	34.919	0.786	0.944	3.274	5.949	-3.37	35.154
1	7	TT_DC8DG9:DC1DG2_PP	-0.817	-1.345	3.566	-6.175	5.942	35.428	-3.044	0.381	3.393	9.592	9.968	36.418
1	2	TT_DG2DG3:DC2DC3_DD	0.385	-0.025	3.394	-1.908	4.836	35.275	-0.767	-0.915	3.336	7.928	3.128	35.644
1	3	TT_DG3DC4:DG1DC2_DD	0.513	0.146	2.988	5.135	1.042	26.743	0.067	0.104	3.035	2.226	-10.968	27.243
1	5	TT_DT6DA7:DT3DA4_PP	0.109	-1.263	3.186	-5.12	2.922	28.501	-3.123	-1.285	2.98	5.855	10.261	29.092

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.