A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 20-Sep-2017 number of released structures: 9123
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NDB ID: 5TYY  PDB ID: 5TYY 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
15T_DA5:DT5_P0.166-0.196-0.207-16.5469.1750.131
17T_DA7:DT3_P0.143-0.10.35512.09-16.0771.439
11T_DC1:DG4_D-0.184-0.0490.529-12.628-13.132-2.493
14T_DC4:DG1_D0.349-0.097-0.18614.249-0.0510.005
18T_DC8:DG2_P0.288-0.169-0.16711.002-10.355-0.142
12T_DG2:DC3_D-0.465-0.250.015-2.094-12.7731.12
13T_DG3:DC2_D-0.315-0.1490.1770.37-8.521-3.245
19T_DG9:DC1_P-0.087-0.1610.067-4.066-9.582-2.751
16T_DT6:DA4_P-0.064-0.161-0.0567.5292.7511.727

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.