A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 22-Nov-2017 number of released structures: 9218
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NDB ID: 5TYY  PDB ID: 5TYY 


Base Pair Morphology Step Parameters

CSV Format

Model NumberStep NumberStep NameShiftSlideRiseTiltRollTwistX-DisplacementY-DisplacementHelical RiseInclinationTipHelical Twist
14TT_DA5DT6:DA4DT5_PP0.635-0.4172.877-3.6897.83718.967-3.975-3.0822.35422.33510.51320.835
16TT_DA7DC8:DG2DT3_PP-0.518-1.4283.42.024.20735.548-2.931.1353.1836.854-3.29235.843
11TT_DC1DG2:DC3DG4_DD-0.2241.2753.3293.5461.24435.9751.8750.873.3332.008-5.72236.165
17TT_DC8DG9:DC1DG2_PP-0.841-1.3923.548-5.2755.67435.778-3.0540.5623.3819.1058.46436.581
12TT_DG2DG3:DC2DC3_DD0.007-0.1143.18-3.7654.59233.64-0.9-0.593.1197.8596.44334.145
13TT_DG3DC4:DG1DC2_DD0.5230.0763.054.2631.72526.947-0.244-0.1053.0933.667-9.06427.329
15TT_DT6DA7:DT3DA4_PP0.226-1.2643.151-4.5523.61529.627-3.116-1.3012.9146.9868.79630.179

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.