A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 17-Jan-2018 number of released structures: 9301
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NDB ID: 5U0Q  PDB ID: 5U0Q 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
11A_A2:DT13_B-2.1852.2410.375-2.474-2.555110.585
13A_C4:G11_B0.177-0.066-0.14911.544-6.532-1.102
15A_C6:G9_B0.244-0.1140.0094.59-14.0792.435
16A_C7:G8_B0.302-0.118-0.1034.627-5.335-0.654
12A_G3:C12_B-0.151-0.110.2197.668-3.949-2.176
14A_U5:A10_B0.008-0.046-0.21912.873-5.5730.054
19D_A10:U5_C0.087-0.110.0181.586-6.7175.348
111D_C12:G3_C0.146-0.103-0.046-3.403-4.353-1.304
112D_DT13:A2_C2.243-2.546-0.6349.6812.329-107.297
17D_G8:C7_C-0.36-0.17-0.05-6.239-0.95-0.948
18D_G9:C6_C-0.428-0.0780.023-3.334-8.2532.912
110D_G11:C4_C-0.191-0.071-0.205-9.922-12.8022.42

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.