A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 17-Jan-2018 number of released structures: 9301
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NDB ID: 5U0Q  PDB ID: 5U0Q 


Base Pair Morphology Step Parameters

CSV Format

Model NumberStep NumberStep NameShiftSlideRiseTiltRollTwistX-DisplacementY-DisplacementHelical RiseInclinationTipHelical Twist
11AA_A2G3:C12DT13_BB-2.758-1.61-1.564109.422-131.213-18.2890.384-1.7360.27468.5657.174-170.968
13AA_C4U5:A10G11_BB-0.846-2.13.29-3.8464.44224.083-6.1960.8442.95810.4499.04624.78
15AA_C6C7:G8G9_BB-0.687-2.0233.220.2366.28330.183-4.9361.3362.74711.903-0.44730.816
16AD_C7G8:C7G8_CB-0.227-3.6423.572-0.1012.5-19.1429.406-0.7354.008-7.476-0.303-19.304
12AA_G3C4:G11C12_BB0.197-1.9753.2581.061.82832.024-3.895-0.1693.1483.309-1.91932.092
14AA_U5C6:G9A10_BB0.808-1.9473.344-0.4866.94736.651-3.936-1.3272.92910.9260.76537.285
19DD_A10G11:C4U5_CC0.837-2.2543.5274.8978.68130.884-5.577-0.6312.89915.794-8.90932.415
111DD_C12DT13:A2G3_CC0.286-1.73.2688.1531.21597.589-1.147-0.0553.2640.806-5.41197.848
17DD_G8G9:C6C7_CC0.553-2.3153.1761.0113.54830.367-5.044-0.8622.9096.742-1.92230.585
18DD_G9A10:U5C6_CC-0.591-2.0473.13-1.4654.5326.901-5.3620.9192.7819.6413.11727.312
110DD_G11C12:G3C4_CC-0.827-2.5683.127-1.0642.36326.663-6.1111.5292.9235.1092.29926.787

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.