5UC6: Base Pair Morphology Parameters

A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 22-Jun-2022 number of released structures: 12128

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NDB ID: 5UC6 PDB ID: 5UC6

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	6	B_85Y8:DA16_B	-0.198	-0.09	0.294	-1.494	-4.957	-1.991
1	4	B_DA5:DA18_B	-5.691	-5.009	0.312	-2.318	-23.807	-176.296
1	7	B_DA9:85Y15_B	0.145	-0.099	0.046	-11.219	-17.672	-10.897
1	1	B_DC1:DG22_B	-0.179	-0.183	0.508	3.097	-3.22	-1.135
1	2	B_DG2:DC21_B	0.639	-0.215	0.333	2.991	0.423	-2.49
1	3	B_DG4:DG19_B	5.504	-0.11	0.53	26.127	13.108	-113.973
1	5	B_DG6:DG17_B	1.143	-1.117	0.196	13.95	18.538	-172.278

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.