A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 22-Jun-2022 number of released structures: 12128
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NDB ID: 5UH8  PDB ID: 5UH8 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
13H_DA17:DT11_G0.472-0.2840.157-12.875-0.142-4.132
17H_DA21:DT7_G0.312-0.560.0473.181-6.748-5.868
12H_DC16:DG12_G0.487-0.3940.173-1.868-6.4869.097
14H_DC18:DG10_G-0.258-0.4810.372-5.617-4.535-0.614
15H_DG19:DC9_G-0.077-0.0050.363-2.54-14.1364.442
16H_DG20:DC8_G0.975-0.2360.5366.85-3.8043.605
19H_DG23:DC5_G0.074-0.036-0.206-27.658-2.942-5.533
11H_DT15:DA13_G-1.1340.268-0.254.16-2.1340.038
18H_DT22:DA6_G-1.234-0.171-0.5487.522-4.066-6.715
113G_DA18:U1_I1.263-0.155-0.63-11.731-14.4627.224
111G_DC16:G3_I0.3910.024-0.0014.504-1.20511.1
112G_DG17:C2_I-0.553-0.184-0.521-6.882-8.3932.626
110G_DT15:A4_I-0.372-0.252-0.9186.628-0.6513.326

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.