A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 22-Jun-2022 number of released structures: 12128
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NDB ID: 5UH8  PDB ID: 5UH8 


Base Pair Morphology Step Parameters

CSV Format

Model NumberStep NumberStep NameShiftSlideRiseTiltRollTwistX-DisplacementY-DisplacementHelical RiseInclinationTipHelical Twist
13HH_DA17DC18:DG10DT11_GG0.114-1.1323.163-2.5295.19726.405-3.655-0.8432.86811.2065.45427.019
17HH_DA21DT22:DA6DT7_GG0.627-1.4563.3534.8374.74330.27-3.644-0.2343.1548.943-9.11931.002
12HH_DC16DA17:DT11DG12_GG-0.9830.1013.576-0.8424.70935.228-0.591.4763.5817.7361.38335.541
14HH_DC18DG19:DC9DG10_GG-0.3050.3193.1150.6276.98537.476-0.3620.5433.11710.757-0.96538.104
15HH_DG19DG20:DC8DC9_GG-0.0010.5433.125-5.2485.79739.1880.149-0.5833.1458.547.7339.93
16HH_DG20DA21:DT7DC8_GG-0.289-0.0163.399-0.6697.01138.489-0.90.3493.34910.5281.00439.104
11HH_DT15DC16:DG12DA13_GG0.212-0.7733.523-9.3559.09638.923-2.145-1.3743.14213.20613.58240.971
18HH_DT22DG23:DC5DA6_GG0.701-0.7794.817-3.8099.79840.384-2.582-1.5644.43813.915.40841.675
110GG_DC16DG17:C2G3_II0.059-2.1123.442.08711.2224.955-7.0080.352.29224.402-4.53827.403
111GG_DG17DA18:U1C2_II-0.011-1.3653.5881.118.33139.803-2.9420.1463.24812.074-1.60940.645
19GG_DT15DC16:G3A4_II0.736-1.1243.5-5.80317.26731.371-4.181-1.9812.41129.0699.7736.161

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.