5UH8: Base Pair Morphology Step Parameters

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As of 22-Jun-2022 number of released structures: 12128

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NDB ID: 5UH8 PDB ID: 5UH8

Base Pair Morphology Step Parameters

CSV Format

Model Number	Step Number	Step Name	Shift	Slide	Rise	Tilt	Roll	Twist	X-Displacement	Y-Displacement	Helical Rise	Inclination	Tip	Helical Twist
1	3	HH_DA17DC18:DG10DT11_GG	0.114	-1.132	3.163	-2.529	5.197	26.405	-3.655	-0.843	2.868	11.206	5.454	27.019
1	7	HH_DA21DT22:DA6DT7_GG	0.627	-1.456	3.353	4.837	4.743	30.27	-3.644	-0.234	3.154	8.943	-9.119	31.002
1	2	HH_DC16DA17:DT11DG12_GG	-0.983	0.101	3.576	-0.842	4.709	35.228	-0.59	1.476	3.581	7.736	1.383	35.541
1	4	HH_DC18DG19:DC9DG10_GG	-0.305	0.319	3.115	0.627	6.985	37.476	-0.362	0.543	3.117	10.757	-0.965	38.104
1	5	HH_DG19DG20:DC8DC9_GG	-0.001	0.543	3.125	-5.248	5.797	39.188	0.149	-0.583	3.145	8.54	7.73	39.93
1	6	HH_DG20DA21:DT7DC8_GG	-0.289	-0.016	3.399	-0.669	7.011	38.489	-0.9	0.349	3.349	10.528	1.004	39.104
1	1	HH_DT15DC16:DG12DA13_GG	0.212	-0.773	3.523	-9.355	9.096	38.923	-2.145	-1.374	3.142	13.206	13.582	40.971
1	8	HH_DT22DG23:DC5DA6_GG	0.701	-0.779	4.817	-3.809	9.798	40.384	-2.582	-1.564	4.438	13.91	5.408	41.675
1	10	GG_DC16DG17:C2G3_II	0.059	-2.112	3.44	2.087	11.22	24.955	-7.008	0.35	2.292	24.402	-4.538	27.403
1	11	GG_DG17DA18:U1C2_II	-0.011	-1.365	3.588	1.11	8.331	39.803	-2.942	0.146	3.248	12.074	-1.609	40.645
1	9	GG_DT15DC16:G3A4_II	0.736	-1.124	3.5	-5.803	17.267	31.371	-4.181	-1.981	2.411	29.069	9.77	36.161

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.