5UHC: Base Pair Morphology Parameters

A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 29-Jun-2022 number of released structures: 12153

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NDB ID: 5UHC PDB ID: 5UHC

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	3	H_DA17:DT11_G	0.476	-0.131	0.282	-10.631	-4.922	-0.993
1	7	H_DA21:DT7_G	0.279	-0.521	0.153	3.805	-9.466	-6.513
1	2	H_DC16:DG12_G	0.124	-0.374	0.401	-2.106	-14.971	9.243
1	4	H_DC18:DG10_G	-0.138	-0.464	0.512	-6.06	-2.526	-1.45
1	5	H_DG19:DC9_G	-0.094	0.128	0.353	-0.759	-13.76	2.902
1	6	H_DG20:DC8_G	0.677	-0.296	0.293	1.565	-6.36	2.77
1	9	H_DG23:DC5_G	-0.567	-0.081	0.638	-9.958	-2.392	-4.957
1	1	H_DT15:DA13_G	-0.76	0.193	-0.187	5.228	-7.187	2.126
1	8	H_DT22:DA6_G	-1.427	-0.087	-0.234	7.439	-4.52	-5.665
1	11	G_DC16:G2_I	0.57	-0.051	-0.688	26.239	-2.223	3.488
1	10	G_DT15:A3_I	0.072	-0.049	-0.503	17.696	-3.039	-5.261

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.