A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 22-Jun-2022 number of released structures: 12128
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NDB ID: 5V1R  PDB ID: 5V1R 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
14T_DA4:DT2_D0.0720.0070.2756.731-7.324-1.685
111T_DA11:DT6_P0.143-0.020.017-1.999-12.2843.764
114T_DA14:DT3_P0.4-0.0580.056-3.032-11.5580.415
11T_DC1:DG5_D-0.18-0.1850.197-14.139-5.161-7.817
12T_DC2:DG4_D0.997-0.3830.092-0.679-7.0495.786
15T_DC5:DG1_D0.1090.068-0.4215.7142.7270.855
17T_DC7:8OG10_P0.478-0.2640.0053.682-6.8640.052
18T_DC8:DG9_P0.039-0.25-0.3223.506-0.205-1.38
110T_DC10:DG7_P0.331-0.2070.096.633-8.807-1.243
113T_DC13:DG4_P0.422-0.292-0.3153.559-15.7330.349
116T_DC16:DG1_P0.326-0.1350.1419.928-11.3734.232
13T_DG3:DC3_D-0.408-0.225-0.174-7.38-15.3615.69
16T_DG6:DC11_P-0.342-0.151-0.049-3.09115.0963.609
19T_DG9:DC8_P-0.362-0.2490.2578.774-2.676-0.339
115T_DG15:DC2_P-0.225-0.2120.2646.149-8.9071.534
112T_DT12:DA5_P-0.0780.093-0.012.195-11.6884.382

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.