5V1R: Base Pair Morphology Parameters

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As of 22-Jun-2022 number of released structures: 12128

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NDB ID: 5V1R PDB ID: 5V1R

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	4	T_DA4:DT2_D	0.072	0.007	0.275	6.731	-7.324	-1.685
1	11	T_DA11:DT6_P	0.143	-0.02	0.017	-1.999	-12.284	3.764
1	14	T_DA14:DT3_P	0.4	-0.058	0.056	-3.032	-11.558	0.415
1	1	T_DC1:DG5_D	-0.18	-0.185	0.197	-14.139	-5.161	-7.817
1	2	T_DC2:DG4_D	0.997	-0.383	0.092	-0.679	-7.049	5.786
1	5	T_DC5:DG1_D	0.109	0.068	-0.42	15.714	2.727	0.855
1	7	T_DC7:8OG10_P	0.478	-0.264	0.005	3.682	-6.864	0.052
1	8	T_DC8:DG9_P	0.039	-0.25	-0.322	3.506	-0.205	-1.38
1	10	T_DC10:DG7_P	0.331	-0.207	0.09	6.633	-8.807	-1.243
1	13	T_DC13:DG4_P	0.422	-0.292	-0.315	3.559	-15.733	0.349
1	16	T_DC16:DG1_P	0.326	-0.135	0.141	9.928	-11.373	4.232
1	3	T_DG3:DC3_D	-0.408	-0.225	-0.174	-7.38	-15.361	5.69
1	6	T_DG6:DC11_P	-0.342	-0.151	-0.049	-3.091	15.096	3.609
1	9	T_DG9:DC8_P	-0.362	-0.249	0.257	8.774	-2.676	-0.339
1	15	T_DG15:DC2_P	-0.225	-0.212	0.264	6.149	-8.907	1.534
1	12	T_DT12:DA5_P	-0.078	0.093	-0.01	2.195	-11.688	4.382

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.