5V1R: Base Pair Morphology Step Parameters

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NDB ID: 5V1R PDB ID: 5V1R

Base Pair Morphology Step Parameters

CSV Format

Model Number	Step Number	Step Name	Shift	Slide	Rise	Tilt	Roll	Twist	X-Displacement	Y-Displacement	Helical Rise	Inclination	Tip	Helical Twist
1	4	TT_DA4DC5:DG1DT2_DD	1.022	-0.533	3.163	5.896	2.437	27.368	-1.668	-0.729	3.248	5.064	-12.25	28.088
1	10	TT_DA11DT12:DA5DT6_PP	0.142	-0.655	3.153	-0.368	1.896	28.752	-1.721	-0.364	3.103	3.812	0.74	28.815
1	13	TT_DA14DG15:DC2DT3_PP	0.419	-0.118	3.075	-3.766	6.396	28.668	-1.488	-1.561	2.903	12.651	7.449	29.594
1	1	TT_DC1DC2:DG4DG5_DD	0.135	0.703	3.161	1.972	4.681	38.705	0.5	0.031	3.224	7.026	-2.96	39.024
1	2	TT_DC2DG3:DC3DG4_DD	0.181	1.978	3.517	0.262	0.635	34.525	3.226	-0.26	3.553	1.07	-0.442	34.532
1	6	TT_DC7DC8:DG98OG10_PP	0.437	-0.966	3.449	2.288	3.708	29.205	-2.718	-0.351	3.327	7.302	-4.505	29.521
1	7	TT_DC8DG9:DC8DG9_PP	-1.116	0.277	3.343	-6.43	5.108	35.764	-0.301	0.841	3.49	8.185	10.303	36.665
1	9	TT_DC10DA11:DT6DG7_PP	0.108	-0.199	3.431	0.52	8.502	36.752	-1.457	-0.096	3.306	13.266	-0.812	37.693
1	12	TT_DC13DA14:DT3DG4_PP	-0.271	0.311	3.472	-1.301	9.988	35.766	-0.95	0.238	3.44	15.878	2.068	37.113
1	3	TT_DG3DA4:DT2DC3_DD	-0.144	0.266	2.902	-4.663	0.486	32.035	0.401	-0.474	2.897	0.876	8.393	32.367
1	5	TT_DG6DC7:8OG10DC11_PP	-0.187	-0.226	3.226	1.034	15.816	26.337	-3.455	0.551	2.658	31.36	-2.05	30.666
1	8	TT_DG9DC10:DG7DC8_PP	-0.447	-0.506	3.441	1.448	3.232	33.015	-1.451	1.035	3.356	5.667	-2.538	33.199
1	14	TT_DG15DC16:DG1DC2_PP	0.259	-0.625	3.097	0.111	5.759	34.248	-1.869	-0.419	2.957	9.694	-0.187	34.715
1	11	TT_DT12DC13:DG4DA5_PP	0.023	0.018	3.149	4.214	4.157	38.261	-0.465	0.464	3.119	6.296	-6.382	38.699

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.