A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 22-Jun-2022 number of released structures: 12128
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NDB ID: 5V1R  PDB ID: 5V1R 


Base Pair Morphology Step Parameters

CSV Format

Model NumberStep NumberStep NameShiftSlideRiseTiltRollTwistX-DisplacementY-DisplacementHelical RiseInclinationTipHelical Twist
14TT_DA4DC5:DG1DT2_DD1.022-0.5333.1635.8962.43727.368-1.668-0.7293.2485.064-12.2528.088
110TT_DA11DT12:DA5DT6_PP0.142-0.6553.153-0.3681.89628.752-1.721-0.3643.1033.8120.7428.815
113TT_DA14DG15:DC2DT3_PP0.419-0.1183.075-3.7666.39628.668-1.488-1.5612.90312.6517.44929.594
11TT_DC1DC2:DG4DG5_DD0.1350.7033.1611.9724.68138.7050.50.0313.2247.026-2.9639.024
12TT_DC2DG3:DC3DG4_DD0.1811.9783.5170.2620.63534.5253.226-0.263.5531.07-0.44234.532
16TT_DC7DC8:DG98OG10_PP0.437-0.9663.4492.2883.70829.205-2.718-0.3513.3277.302-4.50529.521
17TT_DC8DG9:DC8DG9_PP-1.1160.2773.343-6.435.10835.764-0.3010.8413.498.18510.30336.665
19TT_DC10DA11:DT6DG7_PP0.108-0.1993.4310.528.50236.752-1.457-0.0963.30613.266-0.81237.693
112TT_DC13DA14:DT3DG4_PP-0.2710.3113.472-1.3019.98835.766-0.950.2383.4415.8782.06837.113
13TT_DG3DA4:DT2DC3_DD-0.1440.2662.902-4.6630.48632.0350.401-0.4742.8970.8768.39332.367
15TT_DG6DC7:8OG10DC11_PP-0.187-0.2263.2261.03415.81626.337-3.4550.5512.65831.36-2.0530.666
18TT_DG9DC10:DG7DC8_PP-0.447-0.5063.4411.4483.23233.015-1.4511.0353.3565.667-2.53833.199
114TT_DG15DC16:DG1DC2_PP0.259-0.6253.0970.1115.75934.248-1.869-0.4192.9579.694-0.18734.715
111TT_DT12DC13:DG4DA5_PP0.0230.0183.1494.2144.15738.261-0.4650.4643.1196.296-6.38238.699

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.