A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 21-Aug-2019 number of released structures: 10343
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NDB ID: 5VA0  PDB ID: 5VA0 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
17C_DA523:DT510_D0.376-0.2640.038-5.458-6.146-4.825
111C_DA527:DT506_D0.105-0.1940.0049.86-14.9970.816
114C_DA530:DT503_D0.062-0.215-0.056-5.135-12.3150.722
115C_DA531:DT502_D0.402-0.088-0.0941.872-10.4754.459
11C_DC517:DG516_D0.257-0.494-0.249-2.424-11.5910.224
14C_DC520:DG513_D0.368-0.026-0.021-1.571-7.0283.265
18C_DC524:DG509_D0.318-0.1130.499-8.15-6.9886.401
110C_DC526:DG507_D0.169-0.096-0.2394.334-1.9590.486
113C_DC529:DG504_D0.434-0.391-0.091.447-8.9563.282
12C_DG518:DC515_D0.41-0.3290.25110.394-6.761-1.984
13C_DG519:DC514_D0.135-0.1750.3024.161-7.595-2.013
16C_DG522:DC511_D-0.393-0.086-0.289-9.607-3.582.27
116C_DG532:DC501_D-0.075-0.1330.0528.312-13.50.649
15C_DT521:DA512_D-0.05-0.1470.28710.531-11.2635.295
19C_DT525:DA508_D-0.231-0.116-0.109-0.011-8.184-1.946
112C_DT528:DA505_D-0.348-0.002-0.1211.147-10.360.431

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.