A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 11-Dec-2019 number of released structures: 10507
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NDB ID: 5VA0  PDB ID: 5VA0 


Base Pair Morphology Step Parameters

CSV Format

Model NumberStep NumberStep NameShiftSlideRiseTiltRollTwistX-DisplacementY-DisplacementHelical RiseInclinationTipHelical Twist
17CC_DA523DC524:DG509DT510_DD0.739-0.6273.398-4.1192.49731.222-1.624-2.1353.2184.6057.59631.582
111CC_DA527DT528:DA505DT506_DD0.208-0.773.2850.080.38329.856-1.575-0.3863.2760.744-0.15529.859
114CC_DA530DA531:DT502DT503_DD0.261-0.2753.1750.167-2.71833.451-0.043-0.4253.188-4.713-0.28933.559
115CC_DA531DG532:DC501DT502_DD0.183-0.4483.257-2.0569.86331.159-2.457-0.6712.96417.7883.70732.709
11CC_DC517DG518:DC515DG516_DD-0.1750.843.258-0.1998.32333.190.0760.2653.36614.2930.34334.19
14CC_DC520DT521:DA512DG513_DD0.655-0.1523.139-0.8279.41729.443-2.024-1.3832.93317.9551.57730.892
18CC_DC524DT525:DA508DG509_DD-0.481-0.5233.224.477-1.33931.47-0.7151.6783.142-2.451-8.19731.806
110CC_DC526DA527:DT506DG507_DD-0.5760.7563.288-2.4925.76634.1840.3570.5713.3999.7074.19534.74
113CC_DC529DA530:DT503DG504_DD-0.5440.1453.511-2.7898.77633.595-1.2120.4483.47114.8414.71734.799
12CC_DG518DG519:DC514DC515_DD-0.7250.1163.494-3.5444.2836.471-0.4430.6283.5386.795.62236.878
13CC_DG519DC520:DG513DC514_DD0.241-0.6413.3842.9863.86832.745-1.7950.0943.2986.814-5.2633.098
16CC_DG522DA523:DT510DC511_DD-0.946-0.1683.274-3.5471.76437.779-0.4850.9963.3352.7155.4637.978
15CC_DT521DG522:DC511DA512_DD0.073-0.0313.6495.2234.53341.169-0.5760.5123.6086.392-7.36541.721
19CC_DT525DC526:DG507DA508_DD0.6710.4493.2854.1912.01138.4060.427-0.4893.3563.043-6.34238.676
112CC_DT528DC529:DG504DA505_DD0.476-0.0113.5333.0218.76441.276-0.991-0.3243.48512.247-4.22242.26

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.