A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 21-Aug-2019 number of released structures: 10343
Search for released structures

NDB ID: 5VA7  PDB ID: 5VA7 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
11C_DA859:DT855_D0.3870.054-0.058-5.983-11.44414.787
17C_DA865:DT849_D0.033-0.291-0.085-1.786-7.5881.121
111C_DA869:DT845_D0.176-0.0980.33511.441-12.4772.901
114C_DA872:DT842_D0.094-0.077-0.14-3.248-16.533-1.001
110C_DC868:DG846_D0.212-0.052-0.086-2.112-8.7484.248
12C_DG860:DC854_D-0.043-0.1490.1131.215-8.7381.593
13C_DG861:DC853_D0.091-0.3080.2774.072-7.942-6.264
14C_DG862:DC852_D-0.009-0.0460.133-0.412-8.689-0.338
16C_DG864:DC850_D-0.111-0.11-0.197-9.389-7.9811.53
18C_DG866:DC848_D-0.39-0.272-0.043-4.767-11.440.601
112C_DG870:DC844_D0.0-0.050.2898.814-8.746-0.265
113C_DG871:DC843_D0.244-0.2230.1254.102-13.192-1.497
116C_DG874:DC840_D0.091-0.1130.0391.6-13.57-2.961
15C_DT863:DA851_D-0.142-0.250.15311.206-8.5682.942
19C_DT867:DA847_D0.265-0.21-0.083-4.087-18.374-0.76
115C_DT873:DA841_D0.033-0.1810.115-2.585-12.1283.26

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.