A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 11-Dec-2019 number of released structures: 10507
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NDB ID: 5VA7  PDB ID: 5VA7 


Base Pair Morphology Step Parameters

CSV Format

Model NumberStep NumberStep NameShiftSlideRiseTiltRollTwistX-DisplacementY-DisplacementHelical RiseInclinationTipHelical Twist
11CC_DA859DG860:DC854DT855_DD-0.357-0.1693.224-0.9771.82829.796-0.7020.4933.2183.551.89729.867
17CC_DA865DG866:DC848DT849_DD-0.794-0.2693.328-3.9256.59534.851-1.4180.7143.29110.8496.45735.66
111CC_DA869DG870:DC844DT845_DD-0.272-0.2963.357-1.6312.92333.027-1.0210.1963.3295.1252.8633.191
114CC_DA872DT873:DA841DT842_DD0.613-0.6883.308-2.973-1.57531.216-0.973-1.6953.267-2.9155.50531.393
110CC_DC868DA869:DT845DG846_DD-0.1810.6923.14-3.4245.69429.9510.206-0.3213.21410.8516.52430.662
12CC_DG860DG861:DC853DC854_DD-0.8590.0753.26-3.8932.26335.933-0.20.8283.333.656.2836.205
13CC_DG861DG862:DC852DC853_DD0.148-0.6153.4350.4285.43334.691-1.863-0.1793.3059.043-0.71235.103
14CC_DG862DT863:DA851DC852_DD0.323-0.5093.081-0.3194.55528.413-1.973-0.7162.9619.2050.64528.77
16CC_DG864DA865:DT849DC850_DD-0.207-0.4143.202-2.1741.96430.542-1.161-0.0273.1763.7184.11530.678
18CC_DG866DT867:DA847DC848_DD-0.244-0.3513.3530.535-1.03737.195-0.4080.4563.358-1.626-0.83837.212
112CC_DG870DG871:DC843DC844_DD-0.1640.0943.450.3874.24836.989-0.4490.3113.4386.668-0.60737.226
113CC_DG871DA872:DT842DC843_DD-0.172-0.3973.4480.6855.23735.323-1.4390.3843.3538.571-1.12135.703
15CC_DT863DG864:DC850DA851_DD0.008-0.1433.7072.6165.99343.278-0.8390.2713.6518.071-3.52343.745
19CC_DT867DC868:DG846DA847_DD0.6780.5343.3361.379-0.64837.7960.908-0.8653.349-1.0-2.12737.825
115CC_DT873DG874:DC840DA841_DD-0.244-0.7783.264-1.4439.29736.408-2.3870.1962.9914.5822.26437.564

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.