A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 13-Sep-2017 number of released structures: 9117
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NDB ID: 5VAJ  PDB ID: 5VAJ 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
12C_A2:DT11_D0.143-0.061-0.105-7.04-19.9494.407
14C_A4:DT9_D0.063-0.07-0.26-9.811-3.8060.231
19C_A9:DT4_D-0.015-0.12-0.174-16.33-7.6881.577
13C_C3:DG10_D0.213-0.1890.087-3.067-13.556-2.143
15C_C5:DG8_D0.224-0.0690.161.849-7.320.642
16C_C6:DG7_D0.116-0.139-0.201-0.84-9.648-0.382
110C_C12:DG1_D0.153-0.0510.083-1.298-7.0780.032
11C_G1:DC12_D-0.038-0.1780.0-3.673-11.169-2.825
18C_G8:DC5_D-0.215-0.13-0.286-8.891-11.1911.007
17C_U7:DA6_D-0.132-0.0940.04-5.489-5.1714.284

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.