A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 22-Nov-2017 number of released structures: 9218
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NDB ID: 5VAJ  PDB ID: 5VAJ 


Base Pair Morphology Step Parameters

CSV Format

Model NumberStep NumberStep NameShiftSlideRiseTiltRollTwistX-DisplacementY-DisplacementHelical RiseInclinationTipHelical Twist
12CC_A2C3:DG10DT11_DD-0.992-1.0993.18-1.4926.86628.799-3.5151.6442.89313.5512.94529.626
14CC_A4C5:DG8DT9_DD0.532-1.5453.111-1.119-0.31433.893-2.601-1.0823.106-0.5391.91833.912
13CC_C3A4:DT9DG10_DD1.102-1.9143.4916.6143.35625.689-5.078-0.5383.3917.355-14.49526.721
15CC_C5C6:DG7DG8_DD0.72-2.7313.4178.577-0.10719.676-7.291.8683.436-0.296-23.69621.448
16CC_C6U7:DA6DG7_DD0.326-1.5373.529-1.835.14435.068-3.309-0.8153.2578.4733.01435.477
11CC_G1A2:DT11DC12_DD0.647-1.2963.4253.155.54738.817-2.604-0.5763.2588.278-4.70239.318
18CC_G8A9:DT4DC5_DD0.8-2.0233.5143.3496.54327.374-5.674-0.8463.03313.52-6.92128.326
17CC_U7G8:DC5DA6_DD-0.336-1.5483.4444.5839.71924.403-5.7981.8792.54721.698-10.23226.631

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.