A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 11-Dec-2019 number of released structures: 10507
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NDB ID: 5VW1  PDB ID: 5VW1 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
16C_A26:U45_C0.22-0.146-0.430.994-0.018-0.987
110C_A32:U37_C0.6720.1380.1164.629-2.56212.148
112C_A52:G62_C-7.908-5.2910.522-20.8555.775-45.163
116C_A68:G81_C0.2682.851-0.222-9.62620.969-58.52
117C_A69:U80_C0.3350.0760.60517.501-15.193-2.406
18C_C30:G39_C-0.05-0.1090.43-1.329-17.4972.492
115C_C55:G58_C0.446-0.037-0.05521.9418.0845.816
118C_C70:G79_C0.385-0.1410.03715.831-26.391-4.484
11C_G21:U50_C-2.571-0.546-0.228-3.353-2.9550.726
17C_G29:C40_C-0.624-0.3220.201-3.085-11.406-0.346
111C_G33:A36_C7.44-5.2150.25724.4623.66-35.344
113C_G53:C61_C-0.396-0.173-0.564-16.432-13.978-0.718
114C_G54:C60_C-0.121-0.0730.6330.988-3.5021.161
121C_G73:A76_C0.56-6.5660.5115.879-18.69-120.653
12C_U22:A49_C-0.069-0.2340.2664.12-18.0763.418
13C_U23:A48_C-0.017-0.189-0.15312.977-17.1438.992
14C_U24:A47_C0.345-0.090.606-9.405-8.1924.224
15C_U25:A46_C0.150.0770.0498.079-10.6318.563
19C_U31:A38_C-0.371-0.0120.592-6.897-9.5210.708
119C_U71:A78_C-0.24-0.2040.394-0.506-15.2390.989
120C_U72:A77_C0.339-0.247-0.3266.4225.587-6.583

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.