5VW1: Base Pair Morphology Parameters

A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 11-Dec-2019 number of released structures: 10507

Search for released structures

NDB ID: 5VW1 PDB ID: 5VW1

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	6	C_A26:U45_C	0.22	-0.146	-0.43	0.994	-0.018	-0.987
1	10	C_A32:U37_C	0.672	0.138	0.116	4.629	-2.562	12.148
1	12	C_A52:G62_C	-7.908	-5.291	0.522	-20.855	5.775	-45.163
1	16	C_A68:G81_C	0.268	2.851	-0.222	-9.626	20.969	-58.52
1	17	C_A69:U80_C	0.335	0.076	0.605	17.501	-15.193	-2.406
1	8	C_C30:G39_C	-0.05	-0.109	0.43	-1.329	-17.497	2.492
1	15	C_C55:G58_C	0.446	-0.037	-0.055	21.941	8.084	5.816
1	18	C_C70:G79_C	0.385	-0.141	0.037	15.831	-26.391	-4.484
1	1	C_G21:U50_C	-2.571	-0.546	-0.228	-3.353	-2.955	0.726
1	7	C_G29:C40_C	-0.624	-0.322	0.201	-3.085	-11.406	-0.346
1	11	C_G33:A36_C	7.44	-5.215	0.257	24.462	3.66	-35.344
1	13	C_G53:C61_C	-0.396	-0.173	-0.564	-16.432	-13.978	-0.718
1	14	C_G54:C60_C	-0.121	-0.073	0.633	0.988	-3.502	1.161
1	21	C_G73:A76_C	0.56	-6.566	0.51	15.879	-18.69	-120.653
1	2	C_U22:A49_C	-0.069	-0.234	0.266	4.12	-18.076	3.418
1	3	C_U23:A48_C	-0.017	-0.189	-0.153	12.977	-17.143	8.992
1	4	C_U24:A47_C	0.345	-0.09	0.606	-9.405	-8.192	4.224
1	5	C_U25:A46_C	0.15	0.077	0.049	8.079	-10.631	8.563
1	9	C_U31:A38_C	-0.371	-0.012	0.592	-6.897	-9.521	0.708
1	19	C_U71:A78_C	-0.24	-0.204	0.394	-0.506	-15.239	0.989
1	20	C_U72:A77_C	0.339	-0.247	-0.326	6.422	5.587	-6.583

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.