A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 20-Sep-2017 number of released structures: 9123
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NDB ID: 5W0U  PDB ID: 5W0U 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
15D_DA5:DT8_G0.038-0.06-0.393-7.61-3.041-1.504
16D_DA6:DT7_G0.215-0.126-0.445-3.417-3.9991.208
111D_DA11:DT2_G0.286-0.0450.248-1.241-17.77-11.006
14D_DC4:DG9_G0.19-0.105-0.194-3.675-4.2641.797
19D_DC9:DG4_G0.146-0.1720.5121.754-3.633-2.907
110D_DC10:DG3_G0.179-0.1430.4091.892-4.293-3.539
11D_DG1:DC12_G-0.18-0.1870.6919.785-1.932-1.376
17D_DG7:DC6_G-0.138-0.121-0.426-1.778-3.9520.321
18D_DG8:DC5_G-0.173-0.1440.545.9411.3020.444
112D_DG12:DC1_G-0.14-0.1980.645-2.69-9.502-8.152
12D_DT2:DA11_G-0.167-0.0640.2013.799-10.641-4.18
13D_DT3:DA10_G-0.26-0.093-0.434-3.725-9.158-2.261

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.