A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 19-Sep-2018 number of released structures: 9779
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NDB ID: 5W4U  PDB ID: 5W4U 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
17T_6MA7:DT8_N0.3420.38-0.151-15.207-30.669-4.459
13T_DA3:DT12_N0.959-0.0690.155-30.623-29.779-13.866
19T_DA9:DT6_N-1.2390.477-1.7252.225-30.938-35.307
110T_DA10:DT5_N-0.494-0.2330.36311.213-17.422-7.9
113T_DA13:DT2_N0.828-1.059-2.367-13.2730.215-6.09
122T_DA27:U2_R1.9260.360.312-6.168-32.1013.351
11T_DC1:DG14_N0.845-0.3530.589-19.706-13.974-2.521
14T_DC4:DG11_N1.67-0.134-1.488-2.769-23.17-25.243
15T_DC5:DG10_N0.236-0.213-1.590.296-21.18-19.476
112T_DC12:DG3_N-0.3050.075-0.24-22.084-20.413-19.465
115T_DC20:G9_R0.886-0.1970.082-5.843-4.8586.49
116T_DC21:G8_R-0.692-0.057-0.30214.716-13.5351.444
118T_DC23:G6_R-0.3520.1950.463-5.6961.3329.093
120T_DC25:G4_R-0.230.2580.498.765-21.6669.612
121T_DC26:G3_R-1.224-0.0420.619-0.726-22.763.636
16T_DG6:DC9_N-0.368-0.033-1.005-17.616-8.209-20.839
111T_DG11:DC4_N0.6620.154-0.54911.2-41.774-24.224
114T_DG14:DC1_N-0.903-0.763-1.3538.181-7.2534.205
12T_DT2:DA13_N0.004-0.2040.4441.023-34.749-17.54
18T_DT8:DA7_N-1.1-0.151-0.3034.796-15.575-4.395
117T_DT22:A7_R-0.783-0.268-0.421.031-13.3464.511
119T_DT24:A5_R-0.193-0.1880.20811.364-17.519-9.282
123T_DT28:A1_R-0.1730.2860.259-9.859-38.726-7.546

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.