A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 18-Jul-2018 number of released structures: 9608
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NDB ID: 5W51  PDB ID: 5W51 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
17T_6MA7:DT8_N1.4660.3130.853-11.174-25.001-12.327
13T_DA3:DT12_N0.964-0.0860.191-30.219-29.74-13.881
19T_DA9:DT6_N0.7130.54-0.978-1.908-33.392-36.937
110T_DA10:DT5_N-0.3340.5640.6612.686-12.977-1.899
113T_DA13:DT2_N-0.030.816-1.075-15.587-30.176-17.617
122T_DA27:U2_R1.6760.3940.227-6.926-32.4514.891
11T_DC1:DG14_N0.924-0.4020.721-18.936-10.048-3.24
14T_DC4:DG11_N1.58-0.052-1.549-3.028-21.985-26.842
15T_DC5:DG10_N0.485-0.155-1.302-2.148-23.12-20.226
112T_DC12:DG3_N-0.9340.241.785-18.004-15.5671.998
115T_DC20:G9_R0.866-0.0560.481-0.843-11.0368.089
116T_DC21:G8_R-0.5640.042-0.13716.485-12.5360.39
118T_DC23:G6_R-0.3920.1470.372-7.0641.8026.473
120T_DC25:G4_R0.0620.150.6064.085-21.06411.633
121T_DC26:G3_R-1.350.1140.4760.564-22.5766.645
16T_DG6:DC9_N0.5150.131-1.001-22.061-19.57-23.929
111T_DG11:DC4_N1.4240.5371.13210.227-33.58-20.396
12T_DT2:DA13_N0.072-0.2510.5221.612-35.14-18.502
18T_DT8:DA7_N0.716-0.3290.285-5.617-20.02-9.606
114T_DT15:DC1_N2.87-1.3341.6-18.203-15.69615.073
117T_DT22:A7_R-0.594-0.256-0.7063.583-10.3080.486
119T_DT24:A5_R-0.464-0.1690.11911.7-18.174-9.536
123T_DT28:A1_R-0.1660.3310.272-7.995-38.558-6.936

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.