A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 22-Nov-2017 number of released structures: 9218
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NDB ID: 5WNY  PDB ID: 5WNY 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
14T_DA4:DT2_D-0.3650.0310.06210.35-7.861-2.159
110T_DA11:DT6_P0.222-0.070.067-1.022-11.1633.602
113T_DA14:DT3_P-0.007-0.0690.3141.194-11.919-1.712
11T_DC1:DG5_D0.481-0.1040.041-8.256-12.7370.682
12T_DC2:DG4_D0.229-0.4170.21-2.565-8.0511.042
15T_DC5:DG1_D0.130.005-0.54720.0041.6790.401
17T_DC8:DG9_P0.245-0.216-0.60711.015-1.219-0.996
19T_DC10:DG7_P0.362-0.1790.0853.489-7.8570.295
112T_DC13:DG4_P0.515-0.230.03-0.026-13.0591.78
115T_DC16:DG1_P0.626-0.1060.15911.018-12.547.646
13T_DG3:DC3_D-0.226-0.1130.038-8.824-12.0384.813
16T_DG7:DC10_P-0.135-0.140.1323.8160.2540.236
18T_DG9:DC8_P-0.467-0.3660.2167.559-1.2610.915
114T_DG15:DC2_P0.018-0.2630.3386.147-7.934-1.533
111T_DT12:DA5_P-0.0020.0630.0833.066-9.6164.662

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.