A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 22-Nov-2017 number of released structures: 9218
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NDB ID: 5WNY  PDB ID: 5WNY 


Base Pair Morphology Step Parameters

CSV Format

Model NumberStep NumberStep NameShiftSlideRiseTiltRollTwistX-DisplacementY-DisplacementHelical RiseInclinationTipHelical Twist
14TT_DA4DC5:DG1DT2_DD1.007-0.4573.1345.1143.80329.033-1.672-0.9163.1767.472-10.04929.71
19TT_DA11DT12:DA5DT6_PP0.126-0.7033.134-0.286-0.4528.85-1.314-0.3143.143-0.9030.57328.854
112TT_DA14DG15:DC2DT3_PP0.429-0.243.166-1.6153.25432.839-0.951-1.0183.1055.7342.84633.034
11TT_DC1DC2:DG4DG5_DD-0.3890.843.266-0.00311.92830.131-0.7040.6973.3521.8970.00532.355
12TT_DC2DG3:DC3DG4_DD0.4992.5223.535-2.366-4.84744.1063.801-0.8873.225-6.4263.13744.419
16TT_DC8DG9:DC8DG9_PP-1.135-0.093.46-8.6745.43635.259-0.9610.4993.5788.74913.9636.67
18TT_DC10DA11:DT6DG7_PP-0.135-0.333.355-1.7496.67637.36-1.376-0.023.25310.3142.70237.969
111TT_DC13DA14:DT3DG4_PP-0.4890.3593.192-2.0476.68432.878-0.4640.5133.22511.6453.56633.593
13TT_DG3DA4:DT2DC3_DD-0.3230.0292.824-0.2124.1528.12-0.7650.6152.8018.4820.43328.419
15TT_DG7DC8:DG9DC10_PP0.369-0.6373.2695.2677.25830.623-2.4650.2763.06113.385-9.71431.879
17TT_DG9DC10:DG7DC8_PP-0.582-0.5913.4440.7714.23933.226-1.7521.1413.3327.375-1.34133.497
113TT_DG15DC16:DG1DC2_PP0.714-0.5633.0730.7756.20736.374-1.669-1.032.9559.853-1.2336.89
110TT_DT12DC13:DG4DA5_PP-0.004-0.0333.2621.9645.01638.835-0.6460.2413.2297.499-2.93639.193

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.