A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 22-Nov-2017 number of released structures: 9218
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NDB ID: 5X5L  PDB ID: 5X5L 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
12C_DA2:DT23_D0.138-0.127-0.0586.558-20.713.254
13C_DA3:DT22_D0.138-0.0980.1725.12-19.483.503
14C_DA4:DT21_D-0.009-0.1660.027-4.597-8.8370.13
111C_DA11:DT14_D0.108-0.1890.4625.068-16.765-9.423
114C_DA14:DT11_D-0.397-0.1670.2732.015-12.3140.092
115C_DA15:DT10_D-0.323-0.099-0.1270.805-14.452.106
122C_DA22:DT3_D-0.136-0.112-0.0414.193-12.212-7.748
124C_DA24:DT1_D0.264-0.009-0.614-11.477-21.2916.39
15C_DG5:DC20_D0.256-0.078-0.346-11.496-7.0064.132
17C_DG7:DC18_D0.460.1790.024-6.6132.6647.321
19C_DG9:DC16_D-0.213-0.0310.114-3.1-4.5410.914
110C_DG10:DC15_D-0.181-0.0680.1716.681-7.9881.348
112C_DG12:DC13_D0.6870.0060.528-4.094-14.6712.174
116C_DG16:DC9_D0.4290.115-0.186-6.745-9.2249.905
118C_DG18:DC7_D0.1520.1220.1352.5721.5934.867
120C_DG20:DC5_D-0.0550.010.164-2.788-12.4552.062
121C_DG21:DC4_D-0.1010.1150.097.545-12.8262.401
123C_DG23:DC2_D-0.016-0.029-0.021-3.045-5.420.473
11C_DT1:DA24_D-0.333-0.115-0.0713.248-8.888-0.926
16C_DT6:DA19_D-0.61-0.2530.219-11.208-7.072-0.072
18C_DT8:DA17_D-0.23-0.2980.2383.496-8.752-2.003
113C_DT13:DA12_D-0.395-0.446-0.245-2.272-0.192-2.633
117C_DT17:DA8_D-0.503-0.266-0.054-11.144-13.771-4.748
119C_DT19:DA6_D-0.323-0.196-0.0264.87-16.335-3.082
126F_DA2:DT23_G-0.048-0.108-0.1036.208-17.1480.676
127F_DA3:DT22_G0.121-0.0620.0585.73-17.2610.988
128F_DA4:DT21_G-0.012-0.201-0.154-3.971-7.583-2.13
135F_DA11:DT14_G0.1040.1850.284-0.152-16.493-1.493
138F_DA14:DT11_G-0.411-0.0380.0971.352-16.5434.515
139F_DA15:DT10_G-0.2550.016-0.093-0.195-16.5564.106
146F_DA22:DT3_G-0.281-0.216-0.0896.83-10.399-5.897
148F_DA24:DT1_G-0.083-0.362-0.669-6.639-22.2058.133
129F_DG5:DC20_G0.197-0.116-0.52-10.817-6.0912.019
131F_DG7:DC18_G0.4460.158-0.094-5.3661.8697.261
133F_DG9:DC16_G-0.2670.0050.048-2.771-8.2564.151
134F_DG10:DC15_G-0.3980.0840.0864.128-12.0766.478
136F_DG12:DC13_G0.9920.6920.253-6.607-11.32711.69
140F_DG16:DC9_G0.4650.2390.007-7.583-8.42410.164
142F_DG18:DC7_G0.249-0.0160.3183.454-1.3056.793
144F_DG20:DC5_G-0.184-0.0160.19-2.837-11.0424.676
145F_DG21:DC4_G-0.2030.1290.068.084-11.074.875
147F_DG23:DC2_G-0.212-0.222-0.1210.835-4.6221.836
125F_DT1:DA24_G-0.562-0.3160.309-4.3-7.992-0.773
130F_DT6:DA19_G-0.684-0.2620.054-9.973-6.348-1.635
132F_DT8:DA17_G-0.27-0.2970.0814.159-10.908-1.594
137F_DT13:DA12_G-0.023-0.024-0.337-3.799-1.4175.405
141F_DT17:DA8_G-0.335-0.2460.208-9.615-13.041-3.146
143F_DT19:DA6_G-0.398-0.3320.0244.256-17.87-0.229

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.