A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 20-Sep-2017 number of released structures: 9123
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NDB ID: 5X5L  PDB ID: 5X5L 


Base Pair Morphology Step Parameters

CSV Format

Model NumberStep NumberStep NameShiftSlideRiseTiltRollTwistX-DisplacementY-DisplacementHelical RiseInclinationTipHelical Twist
12CC_DA2DA3:DT22DT23_DD0.436-0.2423.173-1.841-0.71634.425-0.3-1.0123.15-1.2083.10734.48
13CC_DA3DA4:DT21DT22_DD0.304-0.5763.5560.522.84834.466-1.443-0.4253.5034.796-0.87634.584
14CC_DA4DG5:DC20DT21_DD-0.102-0.5433.5893.157-0.2936.416-0.8230.643.572-0.462-5.03936.55
111CC_DA11DG12:DC13DT14_DD0.6950.4363.6020.704-8.26140.1041.611-0.913.46-11.892-1.01340.918
114CC_DA14DA15:DT10DT11_DD0.259-0.2593.4371.2924.46734.463-1.148-0.2273.3857.497-2.16934.766
115CC_DA15DG16:DC9DT10_DD-0.336-0.1553.488-1.1482.87336.704-0.6610.3663.4754.5531.81936.83
122CC_DA22DG23:DC2DT3_DD0.184-0.1753.467-2.7574.40836.436-0.91-0.6873.4017.0054.38236.793
15CC_DG5DT6:DA19DC20_DD-0.237-0.6563.27-4.636-1.735.435-0.821-0.2883.3-2.7767.57135.766
17CC_DG7DT8:DA17DC18_DD-1.0640.4233.192-1.5851.51931.2560.51.6753.2572.8152.93831.332
19CC_DG9DG10:DC15DC16_DD-0.220.2883.104-0.3036.58332.899-0.5360.3333.10411.480.52933.535
110CC_DG10DA11:DT14DC15_DD-1.3880.5983.457-3.7820.86640.3610.7591.5483.5791.2525.46740.539
112CC_DG12DT13:DA12DC13_DD0.7930.2853.3817.747-7.73233.1241.714-0.0843.329-13.125-13.14934.837
116CC_DG16DT17:DA8DC9_DD-0.885-0.573.377-2.988-2.90836.132-0.4870.9813.47-4.674.79736.363
118CC_DG18DT19:DA6DC7_DD-0.8650.4693.3770.236-2.13334.481.1281.4943.337-3.593-0.39834.545
120CC_DG20DG21:DC4DC5_DD0.018-0.1163.0520.6233.44532.143-0.7750.0713.0236.199-1.12132.328
121CC_DG21DA22:DT3DC4_DD-1.5860.1513.234-3.3254.94137.511-0.4072.0093.357.6245.13137.964
123CC_DG23DA24:DT1DC2_DD-0.040.483.5614.4259.05537.46-0.5040.663.55113.796-6.74238.746
11CC_DT1DA2:DT23DA24_DD0.1440.8813.176-0.4414.39641.8350.78-0.2453.2466.1360.61542.057
16CC_DT6DG7:DC18DA19_DD0.3570.3223.2330.8283.1534.0670.054-0.4763.2575.362-1.4134.218
18CC_DT8DG9:DC16DA17_DD0.853-0.1083.5342.3955.51834.052-1.109-1.0333.5249.332-4.0534.564
113CC_DT13DA14:DT11DA12_DD-0.5780.8013.303-5.931-0.52737.2521.3080.1093.341-0.8189.21337.709
117CC_DT17DG18:DC7DA8_DD0.4810.4762.97-2.2672.2530.6210.498-1.3072.9544.2454.27730.783
119CC_DT19DG20:DC5DA6_DD0.913-0.0753.429-1.8918.55235.971-1.316-1.7033.27613.63.00736.988
125FF_DA2DA3:DT22DT23_GG0.45-0.243.204-1.346-0.76634.13-0.29-0.9743.189-1.3042.29234.164
126FF_DA3DA4:DT21DT22_GG0.324-0.63.5911.1882.57334.424-1.446-0.3453.5474.338-2.00334.536
127FF_DA4DG5:DC20DT21_GG-0.099-0.5623.6073.04-0.74936.356-0.7830.6213.597-1.197-4.8636.486
134FF_DA11DG12:DC13DT14_GG0.7440.443.5770.844-7.88339.0961.633-0.9863.443-11.634-1.24539.861
137FF_DA14DA15:DT10DT11_GG0.107-0.2583.372-0.383.85535.116-1.01-0.2333.3256.3650.62735.323
138FF_DA15DG16:DC9DT10_GG-0.441-0.1573.433-2.8914.00936.29-0.830.2843.4216.3994.61536.614
145FF_DA22DG23:DC2DT3_GG0.159-0.1673.455-2.6513.98736.063-0.851-0.6423.3986.4044.25936.369
128FF_DG5DT6:DA19DC20_GG-0.231-0.6523.277-4.874-2.10935.263-0.756-0.3383.31-3.4577.9935.648
130FF_DG7DT8:DA17DC18_GG-1.040.4523.181-1.4431.12931.5920.6241.6453.2382.0712.64831.643
132FF_DG9DG10:DC15DC16_GG-0.1540.3133.103-0.4026.96533.078-0.5430.2033.10412.0660.69633.786
133FF_DG10DA11:DT14DC15_GG-1.2130.633.466-3.672.50641.2530.61.293.5873.5455.19141.481
135FF_DG12DT13:DA12DC13_GG0.484-0.1063.4085.352-4.70830.9930.7190.1533.42-8.667-9.85331.783
139FF_DG16DT17:DA8DC9_GG-0.822-0.5173.319-3.296-1.535.582-0.6190.853.397-2.4465.37735.76
141FF_DG18DT19:DA6DC7_GG-0.750.4493.3731.21-2.17735.7281.051.3973.315-3.543-1.9735.812
143FF_DG20DG21:DC4DC5_GG0.034-0.1283.0550.9823.87431.574-0.8930.1063.0187.085-1.79531.82
144FF_DG21DA22:DT3DC4_GG-1.6320.1263.194-2.9725.19136.7-0.4942.1643.2988.1784.68237.168
146FF_DG23DA24:DT1DC2_GG-0.0740.5213.5364.338.52437.058-0.3840.7123.53513.145-6.67738.229
124FF_DT1DA2:DT23DA24_GG0.1240.793.0041.8914.14340.1130.7110.0193.076.017-2.74640.36
129FF_DT6DG7:DC18DA19_GG0.3960.343.2420.5492.61334.4460.17-0.5823.2644.404-0.92534.546
131FF_DT8DG9:DC16DA17_GG0.946-0.0773.4982.0654.87334.716-0.912-1.2353.5048.107-3.43535.105
136FF_DT13DA14:DT11DA12_GG-0.760.7013.234-4.977-1.89235.0261.430.5183.267-3.1218.2135.416
140FF_DT17DG18:DC7DA8_GG0.5430.5182.97-1.1082.31330.7810.564-1.2162.9794.3492.08230.885
142FF_DT19DG20:DC5DA6_GG0.897-0.0473.417-2.3817.80735.732-1.185-1.7663.27112.5223.8236.623

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.