A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 22-Nov-2017 number of released structures: 9218
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NDB ID: 5XOG  PDB ID: 5XOG 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
11P_A1:DT10_T-0.0680.216-0.182-17.071-16.1863.14
15P_A5:DT6_T0.146-0.28-0.338-11.852-10.784-0.648
17P_A7:DT4_T-0.184-0.195-0.0312.332-10.9610.107
13P_C3:DG8_T-0.1280.0080.198-16.74-7.3150.132
14P_G4:DC7_T-0.413-0.251-0.023-14.921-11.317-0.138
16P_G6:DC5_T-0.515-0.075-0.054-4.517-5.0273.474
18P_G8:DC3_T-0.408-0.214-0.221-5.117-11.3134.891
19P_G9:DC2_T-0.246-0.064-0.38-25.152-7.5462.81
12P_U2:DA9_T-0.0830.0910.579-16.621-15.8896.87
110P_U10:DA1_T-0.006-0.160.443-12.2052.1111.956
112T_DA-20:DT21_N-0.10.6981.26623.36-26.19826.202
117T_DA-15:DT16_N0.54-0.6160.0972.37-22.024-18.062
121T_DA-11:DT12_N1.3280.6030.27113.088-15.65825.554
123T_DA-9:DT10_N0.718-0.4640.74423.687-10.417-6.795
124T_DA-8:DT9_N-0.392-0.6550.85219.866-19.088-6.298
127T_DA-5:DT6_N1.0991.0180.28712.15-7.837-35.04
129T_DA-3:DT4_N0.8970.1590.19519.121-14.904-12.287
111T_DC-21:DG22_N1.2242.2130.4262.637-16.15343.663
113T_DC-19:DG20_N0.19-0.010.7929.085-32.0719.411
115T_DC-17:DG18_N0.877-0.665-0.1412.84-27.7291.755
118T_DC-14:DG15_N1.001-0.8040.38620.366-16.9722.753
119T_DC-13:DG14_N0.7680.4520.53713.882-26.9984.52
126T_DC-6:DG7_N-0.662-0.2450.511-1.639-4.086-19.533
131T_DC-1:DG2_N-1.1030.708-0.98926.549-4.938.832
120T_DG-12:DC13_N-1.791-0.0460.6312.903-30.419.192
125T_DG-7:DC8_N-1.068-0.3370.75512.249-13.138-14.28
128T_DG-4:DC5_N-0.0940.50.11123.099-8.444-20.673
130T_DG-2:DC3_N-0.004-0.376-0.3489.981-28.821-9.453
114T_DT-18:DA19_N-0.702-0.6150.1149.315-18.792-12.318
116T_DT-16:DA17_N0.389-0.0490.02827.645-14.203-17.928
122T_DT-10:DA11_N0.0880.087-0.31423.726-20.69818.539

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.