A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 22-Nov-2017 number of released structures: 9218
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NDB ID: 5XOG  PDB ID: 5XOG 


Base Pair Morphology Step Parameters

CSV Format

Model NumberStep NumberStep NameShiftSlideRiseTiltRollTwistX-DisplacementY-DisplacementHelical RiseInclinationTipHelical Twist
11PP_A1U2:DA9DT10_TT-0.089-1.0233.284-3.7720.90633.162-1.931-0.4723.2461.586.5833.381
15PP_A5G6:DC5DT6_TT0.626-1.0873.207-1.314.48227.863-3.219-1.5722.9679.2252.69728.243
17PP_A7G8:DC3DT4_TT1.189-2.4213.5860.9587.10725.096-7.31-2.3712.84615.946-2.14926.085
13PP_C3G4:DC7DG8_TT0.989-1.2583.3195.1378.61927.624-4.311-0.8612.93517.343-10.33729.356
14PP_G4A5:DT6DC7_TT0.028-1.0993.3214.9983.86933.685-2.4740.7383.1516.604-8.53134.256
16PP_G6A7:DT4DC5_TT-0.025-1.2553.1630.8335.54930.737-3.3130.1952.89510.361-1.55431.233
18PP_G8G9:DC2DC3_TT-0.682-2.123.725-0.49711.18933.157-5.2871.0582.8918.9460.84134.947
19PP_G9U10:DA1DC2_TT-0.42-1.0433.145-4.79412.89728.143-4.153-0.0452.47924.7399.19531.265
12PP_U2C3:DG8DA9_TT-0.077-0.9053.1794.5122.76234.762-1.8940.7743.0664.591-7.49835.15
111TT_DA-20DC-19:DG20DT21_NN-0.82-0.9823.306-2.3911.29735.924-1.7750.9823.3152.0993.8736.023
116TT_DA-15DC-14:DG15DT16_NN0.565-0.8183.089-5.289-9.73930.0790.224-1.9513.059-18.0159.78332.012
120TT_DA-11DT-10:DA11DT12_NN0.212-0.8053.0221.51-7.43224.3510.224-0.0643.133-17.095-3.47325.488
122TT_DA-9DA-8:DT9DT10_NN0.208-1.6813.302-5.078-2.16230.816-2.699-1.3673.333-4.0289.46131.295
123TT_DA-8DG-7:DC8DT9_NN0.104-0.2653.478-0.996-3.89132.7070.241-0.3643.481-6.8771.7632.946
126TT_DA-5DG-4:DC5DT6_NN1.223-1.1283.2594.91510.91826.51-4.565-1.3962.76722.412-10.08829.045
128TT_DA-3DG-2:DC3DT4_NN0.262-0.3713.7712.6623.76828.09-1.7460.1683.6997.696-5.43828.458
110TT_DC-21DA-20:DT21DG22_NN-1.2191.1633.008-12.888-1.96830.8522.3420.0193.173-3.50922.98233.432
112TT_DC-19DT-18:DA19DG20_NN-1.189-0.173.3691.892-4.6130.6850.5872.5913.281-8.64-3.54631.078
114TT_DC-17DT-16:DA17DG18_NN-0.512-0.3213.079-2.6288.89324.601-2.9430.4652.83119.9875.90526.266
117TT_DC-14DC-13:DG14DG15_NN0.1360.4883.90812.18-4.57433.5471.5731.8623.642-7.58-20.18435.914
118TT_DC-13DG-12:DC13DG14_NN-0.017-0.622.829-2.48214.63918.163-5.518-0.6351.81738.9846.6123.42
125TT_DC-6DA-5:DT6DG7_NN-0.2640.0743.0416.218-14.31338.9221.4910.9722.777-20.506-8.90941.821
119TT_DG-12DA-11:DT12DC13_NN-0.0630.6423.4070.2043.89949.2560.4640.0923.4454.669-0.24549.4
124TT_DG-7DC-6:DG7DC8_NN0.313-0.9843.6560.515-2.84334.189-1.164-0.443.727-4.825-0.87534.307
127TT_DG-4DA-3:DT4DC5_NN-0.398-0.4853.569-1.2085.74142.87-1.2660.4123.4897.811.64343.251
129TT_DG-2DC-1:DG2DC3_NN1.562-0.0852.96911.276-3.96724.4620.832-0.4473.326-8.727-24.80727.187
113TT_DT-18DC-17:DG18DA19_NN0.6680.8673.4275.917-1.50453.0381.066-0.3483.454-1.678-6.60153.363
115TT_DT-16DA-15:DT16DA17_NN-1.4740.2883.892-0.48710.69343.412-0.8011.8863.8714.20.64644.65
121TT_DT-10DA-9:DT10DA11_NN-0.5960.3553.36-4.9847.70839.81-0.3810.2783.41511.147.20440.813

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.