5XWP: Base Pair Morphology Parameters

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As of 12-Aug-2022 number of released structures: 12231

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NDB ID: 5XWP PDB ID: 5XWP

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	1	C_A5:U25_C	0.459	0.555	-0.159	1.563	2.947	15.044
1	6	C_A31:U29_D	-0.474	-0.282	0.568	9.556	-7.818	-1.695
1	8	C_A33:U27_D	-0.907	0.016	0.257	6.148	-24.235	16.315
1	9	C_A34:U26_D	0.544	0.046	0.083	-0.195	-16.724	10.706
1	10	C_A35:U25_D	-0.121	0.355	-0.131	-10.395	-13.229	0.704
1	14	C_A39:U21_D	0.533	0.023	-0.22	-4.457	-16.725	0.962
1	19	C_A44:U16_D	0.662	-0.345	-0.584	-0.782	-12.408	-4.253
1	20	C_A45:U15_D	0.033	0.004	-0.103	-8.382	-11.348	3.491
1	22	C_A47:U13_D	0.032	-0.03	-0.329	0.262	-5.804	11.144
1	23	C_A48:U12_D	0.186	0.199	-0.184	0.898	-25.406	9.296
1	24	C_A49:U11_D	-0.042	-0.157	-0.324	-1.597	-17.78	4.599
1	2	C_C6:G22_C	-0.089	-0.048	0.501	-11.678	-7.102	7.112
1	3	C_C7:G21_C	0.162	0.466	0.504	3.825	-19.963	5.007
1	4	C_C8:G20_C	0.715	-0.097	-0.325	10.174	-17.159	7.093
1	5	C_C9:G19_C	0.133	0.057	-0.06	20.105	-14.762	0.618
1	7	C_C32:G28_D	-2.7	-0.239	0.635	3.85	-19.213	-16.816
1	12	C_C37:G23_D	0.261	0.018	0.069	3.173	-18.856	6.774
1	16	C_C41:G19_D	-0.059	-0.303	-0.126	-2.379	-18.323	-7.272
1	25	C_C50:G10_D	0.454	0.049	-0.027	2.477	-18.565	1.046
1	27	C_C52:G8_D	-0.396	0.209	-0.299	-0.281	-10.238	5.927
1	30	C_C55:G5_D	-0.223	-0.074	0.298	-2.25	-19.8	1.773
1	33	C_C58:G2_D	0.661	-0.321	0.161	3.162	-10.389	7.812
1	18	C_G43:C17_D	-0.266	-0.174	-0.505	-6.417	-16.609	2.373
1	11	C_U36:A24_D	-0.818	0.073	-0.265	3.882	-13.319	1.315
1	13	C_U38:A22_D	0.349	-0.02	0.536	-5.934	-14.786	-0.058
1	15	C_U40:A20_D	-0.345	-0.132	-0.53	0.601	-19.238	2.858
1	17	C_U42:A18_D	-0.26	-0.008	-0.019	2.07	-18.912	6.253
1	21	C_U46:A14_D	0.526	0.163	-0.43	1.173	-11.037	5.716
1	26	C_U51:A9_D	-0.742	0.471	-0.183	3.429	-14.221	15.388
1	28	C_U53:A7_D	-0.97	-0.181	-0.053	0.032	-14.818	2.538
1	29	C_U54:A6_D	0.048	2.942	0.005	-5.633	-15.754	-97.694
1	31	C_U56:A4_D	-1.306	-0.116	0.126	11.633	-17.044	12.322
1	32	C_U57:A3_D	-0.227	-0.423	-0.276	11.482	-23.073	4.188
1	34	E_A5:U25_E	0.489	0.583	-0.175	-0.646	1.655	11.598
1	40	E_A33:U27_F	0.247	0.532	-0.114	-13.395	-15.124	14.405
1	41	E_A34:U26_F	-0.117	0.337	-0.056	-12.484	-26.493	20.721
1	42	E_A35:U25_F	0.772	-0.503	0.029	-3.243	-21.49	-5.227
1	46	E_A39:U21_F	-0.004	0.05	0.057	-0.496	-14.44	-0.2
1	51	E_A44:U16_F	0.607	-0.178	-0.763	-0.363	-9.635	3.154
1	52	E_A45:U15_F	0.352	-0.002	-0.367	-10.263	-13.365	11.72
1	54	E_A47:U13_F	0.486	-0.095	-0.297	6.167	-17.729	13.071
1	55	E_A48:U12_F	0.163	0.007	-0.205	3.468	-14.079	5.453
1	56	E_A49:U11_F	-0.011	-0.018	-0.153	1.693	-16.421	3.205
1	35	E_C6:G22_E	0.853	0.368	0.096	-19.283	-8.135	2.263
1	36	E_C7:G21_E	-0.314	0.443	0.314	7.707	-20.414	13.162
1	37	E_C8:G20_E	0.144	0.13	-0.115	9.303	-18.523	2.962
1	38	E_C9:G19_E	0.405	-0.09	-0.592	19.53	-8.21	2.12
1	39	E_C32:G28_F	-1.987	-0.088	0.783	-9.257	-21.356	-0.458
1	44	E_C37:G23_F	0.141	0.367	0.358	5.349	-23.777	13.231
1	48	E_C41:G19_F	0.012	-0.176	0.177	-2.752	-7.516	-4.167
1	57	E_C50:G10_F	-0.162	0.265	-0.233	6.846	-17.575	1.393
1	59	E_C52:G8_F	0.579	-0.146	0.498	2.343	-13.196	4.269
1	62	E_C55:G5_F	0.881	-0.633	-0.426	0.918	-18.049	-5.424
1	65	E_C58:G2_F	1.474	-0.051	-0.165	13.076	-19.557	21.518
1	50	E_G43:C17_F	-0.064	0.122	-0.494	-7.323	-10.663	6.998
1	43	E_U36:A24_F	-1.34	-0.182	-0.409	2.864	-9.301	-6.01
1	45	E_U38:A22_F	0.417	0.068	0.087	-0.528	-20.333	6.281
1	47	E_U40:A20_F	-0.045	-0.141	-0.435	-1.697	-19.207	-2.61
1	49	E_U42:A18_F	-0.257	-0.061	0.047	3.204	-14.338	5.494
1	53	E_U46:A14_F	0.472	-0.134	-0.221	0.326	-15.989	5.344
1	58	E_U51:A9_F	-0.605	0.17	-0.309	1.789	-11.739	5.606
1	60	E_U53:A7_F	-1.06	-0.268	0.198	8.096	-9.728	-3.387
1	61	E_U54:A6_F	-0.206	3.423	-0.322	-5.283	-20.188	-92.337
1	63	E_U56:A4_F	-0.352	-0.348	-0.641	0.605	-10.994	9.035
1	64	E_U57:A3_F	0.498	0.114	0.373	2.062	-18.106	0.91

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.