5XWP: Base Pair Morphology Step Parameters

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As of 12-Aug-2022 number of released structures: 12231

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NDB ID: 5XWP PDB ID: 5XWP

Base Pair Morphology Step Parameters

CSV Format

Model Number	Step Number	Step Name	Shift	Slide	Rise	Tilt	Roll	Twist	X-Displacement	Y-Displacement	Helical Rise	Inclination	Tip	Helical Twist
1	1	CC_A5C6:G22U25_CC	1.949	-1.163	3.262	4.001	7.186	46.557	-2.036	-2.107	3.206	9.009	-5.015	47.238
1	5	CC_A31C32:G28U29_DD	0.085	-1.761	3.523	-4.842	9.18	24.708	-6.141	-1.416	2.646	20.344	10.731	26.768
1	7	CC_A33A34:U26U27_DD	-0.233	-0.906	3.513	0.155	10.245	38.777	-2.543	0.359	3.181	15.111	-0.229	40.058
1	8	CC_A34A35:U25U26_DD	-0.073	-1.389	3.621	1.004	6.788	25.789	-4.879	0.434	3.153	14.876	-2.201	26.672
1	9	CC_A35U36:A24U25_DD	-0.039	-1.605	3.068	-0.09	4.877	21.756	-5.769	0.072	2.649	12.716	0.233	22.29
1	13	CC_A39U40:A20U21_DD	0.135	-1.279	3.219	2.763	7.847	24.36	-4.918	0.416	2.682	17.938	-6.316	25.721
1	18	CC_A44A45:U15U16_DD	0.789	-1.878	3.655	-0.823	21.567	26.178	-6.444	-1.48	1.651	40.057	1.528	33.807
1	19	CC_A45U46:A14U15_DD	-0.18	-1.232	3.358	2.868	6.568	26.957	-4.096	1.044	2.947	13.782	-6.018	27.877
1	21	CC_A47A48:U12U13_DD	-0.486	-0.702	3.357	0.755	14.371	30.539	-3.509	0.959	2.748	25.576	-1.344	33.687
1	22	CC_A48A49:U11U12_DD	-0.231	-1.001	3.408	-0.286	14.386	28.667	-4.351	0.369	2.621	27.01	0.537	32.007
1	23	CC_A49C50:G10U11_DD	-0.131	-0.878	3.377	-0.441	10.735	31.753	-3.28	0.155	2.936	18.954	0.779	33.477
1	2	CC_C6C7:G21G22_CC	-0.537	-1.366	2.84	-3.341	5.84	33.117	-3.147	0.47	2.608	10.115	5.787	33.774
1	3	CC_C7C8:G20G21_CC	-0.707	-1.418	3.145	1.808	1.178	35.294	-2.499	1.417	3.059	1.94	-2.978	35.358
1	4	CC_C8C9:G19G20_CC	-0.816	-1.995	3.282	-6.861	5.197	21.28	-6.805	-0.308	2.842	13.388	17.676	22.936
1	6	CC_C32A33:U27G28_DD	0.718	-1.11	2.984	1.178	7.377	41.954	-2.189	-0.884	2.777	10.206	-1.63	42.585
1	11	CC_C37U38:A22G23_DD	0.238	-1.732	3.48	-3.337	5.985	29.859	-4.474	-1.116	3.039	11.427	6.37	30.617
1	15	CC_C41U42:A18G19_DD	0.678	-1.601	3.234	0.215	5.669	30.46	-4.034	-1.23	2.9	10.674	-0.406	30.971
1	24	CC_C50U51:A9G10_DD	0.605	-1.354	3.134	2.539	11.134	25.024	-5.27	-0.722	2.375	24.154	-5.508	27.469
1	26	CC_C52U53:A7G8_DD	-0.293	-1.455	3.423	-3.711	4.743	25.348	-4.544	-0.381	3.113	10.619	8.309	26.042
1	29	CC_C55U56:A4G5_DD	0.244	-1.468	2.859	0.759	-2.177	30.339	-2.41	-0.33	2.96	-4.153	-1.447	30.424
1	17	CC_G43A44:U16C17_DD	-0.124	-1.088	3.427	-0.962	13.447	33.621	-3.63	0.065	2.805	22.172	1.586	36.15
1	10	CC_U36C37:G23A24_DD	0.452	-1.76	3.438	-1.913	7.814	37.275	-3.68	-0.933	2.996	12.053	2.951	38.103
1	12	CC_U38A39:U21A22_DD	-1.1	-1.232	3.046	2.503	8.767	35.445	-3.022	2.056	2.597	14.113	-4.029	36.562
1	14	CC_U40C41:G19A20_DD	0.037	-0.798	3.427	-3.113	11.316	34.229	-2.904	-0.504	3.007	18.562	5.106	36.129
1	16	CC_U42G43:C17A18_DD	-0.709	-1.189	3.607	1.171	11.393	30.108	-4.258	1.497	2.946	21.001	-2.159	32.165
1	20	CC_U46A47:U13A14_DD	0.339	-0.603	3.345	-2.341	19.344	32.343	-3.397	-0.824	2.567	31.424	3.803	37.624
1	25	CC_U51C52:G8A9_DD	-0.151	-0.717	3.462	-1.815	10.941	34.565	-2.733	-0.019	3.104	17.854	2.961	36.249
1	27	CC_U53U54:A6A7_DD	-0.519	-2.781	3.02	-2.827	5.943	80.729	-2.28	0.334	2.859	4.581	2.179	80.951
1	28	CC_U54C55:G5A6_DD	-0.855	-0.516	3.742	-3.724	10.263	-19.431	-3.148	-3.841	3.365	-27.752	-10.07	-22.263
1	30	CC_U56U57:A3A4_DD	-0.27	-0.592	3.308	3.795	10.368	37.64	-2.107	0.851	3.007	15.661	-5.733	39.17
1	31	CC_U57C58:G2A3_DD	-0.405	0.003	3.694	0.085	16.078	35.563	-2.211	0.62	3.387	24.82	-0.131	38.921
1	32	EE_A5C6:G22U25_EE	1.463	-1.205	3.581	8.62	5.217	52.904	-1.694	-1.02	3.635	5.796	-9.577	53.787
1	37	EE_A33A34:U26U27_FF	0.104	-0.637	3.135	2.599	13.01	30.677	-3.107	0.219	2.654	23.273	-4.649	33.36
1	38	EE_A34A35:U25U26_FF	-1.1	-1.109	3.343	-3.468	1.083	33.692	-2.082	1.31	3.4	1.862	5.961	33.882
1	39	EE_A35U36:A24U25_FF	0.33	-1.903	3.195	0.13	6.002	12.535	-12.788	-1.257	2.068	25.65	-0.554	13.893
1	43	EE_A39U40:A20U21_FF	0.021	-1.371	3.38	3.783	13.807	33.535	-4.036	0.471	2.62	22.688	-6.216	36.382
1	48	EE_A44A45:U15U16_FF	0.976	-1.524	3.739	1.779	20.498	26.629	-6.03	-1.398	2.121	38.099	-3.306	33.537
1	49	EE_A45U46:A14U15_FF	-0.659	-1.092	3.333	0.005	9.382	25.296	-4.651	1.414	2.758	20.544	-0.011	26.953
1	51	EE_A47A48:U12U13_FF	-0.535	-0.915	3.223	-1.819	19.3	29.605	-4.134	0.636	2.256	33.616	3.169	35.268
1	52	EE_A48A49:U11U12_FF	-0.109	-1.106	3.432	1.2	15.502	29.591	-4.433	0.384	2.548	28.047	-2.171	33.346
1	53	EE_A49C50:G10U11_FF	-0.112	-0.884	3.348	1.377	10.034	28.571	-3.679	0.487	2.871	19.57	-2.687	30.278
1	33	EE_C6C7:G21G22_EE	0.267	-1.313	2.533	-3.697	8.097	24.829	-4.413	-1.285	1.955	18.105	8.266	26.353
1	34	EE_C7C8:G20G21_EE	-0.764	-1.587	3.399	-1.049	-1.536	33.303	-2.497	1.147	3.488	-2.677	1.828	33.353
1	35	EE_C8C9:G19G20_EE	-0.61	-1.72	3.16	-0.317	6.233	28.49	-4.657	1.149	2.736	12.477	0.635	29.152
1	36	EE_C32A33:U27G28_FF	0.294	-1.314	3.239	0.087	11.242	45.595	-2.533	-0.363	2.857	14.252	-0.111	46.888
1	41	EE_C37U38:A22G23_FF	-0.177	-1.159	3.642	1.07	0.797	31.0	-2.336	0.558	3.603	1.49	-2.0	31.028
1	45	EE_C41U42:A18G19_FF	0.581	-1.573	3.271	0.819	3.446	30.414	-3.643	-0.942	3.093	6.54	-1.554	30.615
1	54	EE_C50U51:A9G10_FF	0.34	-1.273	3.373	1.144	11.32	29.016	-4.459	-0.422	2.709	21.576	-2.181	31.122
1	56	EE_C52U53:A7G8_FF	-0.512	-1.947	3.1	-1.806	1.698	20.466	-6.133	0.695	2.964	4.758	5.058	20.614
1	59	EE_C55U56:A4G5_FF	-0.291	-1.64	3.414	0.926	6.747	21.682	-6.521	1.063	2.768	17.392	-2.387	22.714
1	47	EE_G43A44:U16C17_FF	-0.128	-1.048	3.291	0.439	13.029	34.364	-3.364	0.26	2.727	21.134	-0.713	36.684
1	40	EE_U36C37:G23A24_FF	1.238	-1.24	3.291	-2.654	10.758	40.622	-2.786	-1.987	2.806	15.158	3.739	42.044
1	42	EE_U38A39:U21A22_FF	-1.052	-1.256	3.105	-1.498	11.432	28.57	-4.353	1.723	2.482	22.064	2.892	30.764
1	44	EE_U40C41:G19A20_FF	0.256	-1.114	3.41	-4.713	8.821	31.863	-3.397	-1.224	2.939	15.595	8.333	33.357
1	46	EE_U42G43:C17A18_FF	-0.428	-1.32	3.545	1.091	12.703	30.361	-4.52	0.944	2.769	23.021	-1.978	32.871
1	50	EE_U46A47:U13A14_FF	0.592	-0.412	3.23	2.026	12.447	32.047	-2.589	-0.693	2.905	21.533	-3.505	34.379
1	55	EE_U51C52:G8A9_FF	0.292	-1.037	3.341	-5.25	11.883	39.381	-2.707	-0.96	2.864	17.078	7.545	41.388
1	57	EE_U53U54:A6A7_FF	-0.335	-2.943	3.046	2.601	7.079	78.545	-2.491	0.328	2.805	5.579	-2.05	78.847
1	58	EE_U54C55:G5A6_FF	-0.982	0.471	3.945	-2.934	5.514	-7.163	-15.501	-12.665	2.4	-36.314	-19.324	-9.501
1	60	EE_U56U57:A3A4_FF	-0.239	-1.554	3.355	-7.192	14.585	34.288	-4.168	-0.504	2.513	23.192	11.436	37.844
1	61	EE_U57C58:G2A3_FF	0.273	0.273	2.98	8.105	16.064	34.288	-1.461	0.531	2.824	25.213	-12.72	38.596

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.