A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 22-Jun-2022 number of released structures: 12128
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NDB ID: 5Z7D  PDB ID: 5Z7D 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
113J_DA13:DT4_I0.275-0.1660.313-25.674-18.8173.998
12J_DC2:DG15_I-0.394-0.4790.13913.292-8.335-3.452
14J_DC4:DG13_I-0.5670.449-0.71915.541-7.041-2.111
16J_DC6:DG11_I-0.6490.4020.4723.696-18.46514.023
110J_DC10:DG7_I1.265-0.128-0.6651.511-9.086-14.265
11J_DG1:DC16_I0.017-0.351-0.97247.0314.743-18.363
112J_DG12:DC5_I-1.409-0.1790.418-1.871-25.6780.698
115J_DG15:DC2_I1.029-0.308-0.5694.67620.937-12.027
116J_DG16:DC1_I1.3070.345-0.07921.30813.83815.482
13J_DT3:DA14_I0.356-0.074-0.3731.31-8.132-3.48
15J_DT5:DA12_I0.981-0.1850.08518.428-1.7634.117
17J_DT7:DA10_I-1.158-0.063-0.512-1.977-22.44416.544
18J_DT8:DA9_I-1.085-0.001-0.517-7.711-12.69211.825
19J_DT9:DA8_I0.003-0.511-0.728-2.908-10.348-0.399
111J_DT11:DA6_I0.3360.272-0.26513.254-22.0719.83
114J_DT14:DA3_I-1.2880.694-0.154-6.6879.67311.278
130K_DC2:DG15_L0.137-0.947-1.5423.075-9.065-0.822
129L_DA13:DT4_K1.382-0.948-2.078-9.664-3.26-7.29
118L_DC2:DG15_K-0.5171.2090.4358.737-18.99724.355
120L_DC4:DG13_K0.051-0.683-0.7824.188-18.9083.298
122L_DC6:DG11_K-0.8750.973-0.89813.397-14.0589.241
126L_DC10:DG7_K-1.004-0.121-1.22910.554-6.166-16.752
117L_DG1:DC16_K0.3810.218-0.44836.175-13.6884.398
128L_DG12:DC5_K-0.791-0.428-1.0710.065-12.556-14.859
119L_DT3:DA14_K1.18-0.4511.0362.226-10.7660.72
121L_DT5:DA12_K1.2490.262-0.0756.207-10.28416.683
123L_DT7:DA10_K-0.0510.827-0.326-2.965-17.17511.025
124L_DT8:DA9_K-1.0770.158-0.331-2.571-13.9658.32
125L_DT9:DA8_K-0.366-0.555-0.6883.966-12.989-1.198
127L_DT11:DA6_K0.1610.021-1.28326.386-12.056-1.093

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.