A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 22-Jun-2022 number of released structures: 12128
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NDB ID: 5Z7D  PDB ID: 5Z7D 


Base Pair Morphology Step Parameters

CSV Format

Model NumberStep NumberStep NameShiftSlideRiseTiltRollTwistX-DisplacementY-DisplacementHelical RiseInclinationTipHelical Twist
113JJ_DA13DT14:DA3DT4_II0.032-0.3373.2070.295-12.45728.3371.795-0.0033.08-24.029-0.5730.904
12JJ_DC2DT3:DA14DG15_II-0.173-0.414.32.8070.93834.911-0.8650.8414.2611.559-4.66835.032
14JJ_DC4DT5:DA12DG13_II0.9410.0183.412-3.9043.62336.927-0.465-2.0033.2865.6846.12437.296
16JJ_DC6DT7:DA10DG11_II0.608-0.0934.1415.8833.77936.126-0.8060.0624.1556.024-9.37836.774
110JJ_DC10DT11:DA6DG7_II1.870.752.9267.2182.93930.0460.852-2.1463.3315.552-13.63631.017
11JJ_DG1DC2:DG15DC16_II1.183-0.4765.439-0.3016.9337.197-2.205-1.895.2610.7490.46637.816
112JJ_DG12DA13:DT4DC5_II-0.0680.0514.229-6.7223.38147.011-0.289-0.6154.1944.2078.36447.576
115JJ_DG15DG16:DC1DC2_II1.2572.1793.3721.18816.55122.215-0.526-2.2644.05837.03-2.65827.666
116JL_DG16DG1:DC16DC1_KI-3.58-1.5223.592-19.948-25.05810.2625.187-0.0314.364-56.87445.27533.591
13JJ_DT3DC4:DG13DA14_II0.0010.0312.9462.6382.01333.174-0.2470.3932.9343.515-4.60633.334
15JJ_DT5DC6:DG11DA12_II0.6830.333.3493.449-2.65433.2311.023-0.63.365-4.616-5.99833.507
17JJ_DT7DT8:DA9DA10_II0.4480.3333.493-0.5731.99238.8340.242-0.7483.4992.9930.86138.887
18JJ_DT8DT9:DA8DA9_II-0.536-0.1223.2190.7823.538.941-0.5950.8933.1855.237-1.1739.1
19JJ_DT9DC10:DG7DA8_II-1.0260.2453.2632.132-0.73441.8510.4181.6543.205-1.027-2.98341.909
111JJ_DT11DG12:DC5DA6_II-0.5670.3483.39-9.3569.29430.51-1.076-0.7043.37616.71516.82733.176
114JJ_DT14DG15:DC2DA3_II-1.2160.7013.2272.11513.55326.562-1.5382.8143.10827.304-4.26129.838
118LL_DC2DT3:DA14DG15_KK-1.5020.0053.632-5.5313.38337.787-0.4761.4973.7935.1778.46438.319
120LL_DC4DT5:DA12DG13_KK1.4580.2443.633-3.192-3.01840.1770.724-2.5023.485-4.3784.6340.407
122LL_DC6DT7:DA10DG11_KK0.345-0.4833.6160.4056.32835.891-1.734-0.493.48710.17-0.6536.428
126LL_DC10DT11:DA6DG7_KK1.510.962.9374.7565.07337.6470.862-1.7393.1957.78-7.29338.261
117LL_DG1DC2:DG15DC16_KK1.224-0.5093.980.9099.17534.089-2.477-1.8583.75215.306-1.51635.278
128LL_DG12DA13:DT4DC5_KK-0.31-0.3234.084-3.4922.95545.056-0.7480.0154.0683.8444.54345.276
119LL_DT3DC4:DG13DA14_KK-0.0520.4473.39610.8862.54137.3140.3491.4583.2773.866-16.56438.896
121LL_DT5DC6:DG11DA12_KK-0.534-0.3362.8715.333-1.86628.452-0.3152.0852.743-3.749-10.71628.996
123LL_DT7DT8:DA9DA10_KK0.3590.0083.0151.4973.68732.333-0.58-0.3993.0116.589-2.67632.57
124LL_DT8DT9:DA8DA9_KK-0.4510.1533.0860.7153.90338.604-0.2190.7613.0775.885-1.07938.8
125LL_DT9DC10:DG7DA8_KK-1.0020.2453.0942.1040.71435.0350.3061.9573.0351.185-3.49135.103
127LL_DT11DG12:DC5DA6_KK-1.1770.0544.271-7.014.19231.466-2.7820.5334.08724.33812.00435.132

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.