A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 26-Jun-2019 number of released structures: 10246
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NDB ID: 5ZEG  PDB ID: 5ZEG 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
111A_A14:U34_B0.059-0.0690.1770.599-14.0610.137
115A_A17:U2_C-0.152-0.073-0.0577.032-5.1933.468
116A_A18:U1_C-0.0380.048-0.806-23.783-14.8679.356
12A_C4:G45_B0.052-0.0960.1734.307-11.530.459
15A_C7:G42_B0.282-0.187-0.276-1.847-9.3551.434
16A_C9:G39_B0.059-0.2280.0367.37-19.821-3.039
19A_C12:G36_B0.217-0.2230.303-3.254-9.618-0.263
112A_C15:G33_B0.303-0.1810.2541.19-16.033.175
118A_C21:G28_B-0.402-0.0920.021-1.685-13.716-0.423
120A_C23:G26_B0.23-0.086-0.036-1.213-5.943-1.151
11A_G3:C46_B-0.038-0.0330.3252.984-6.497-0.019
13A_G5:C44_B-0.197-0.238-0.123-1.209-11.663.568
17A_G10:C38_B-0.377-0.1390.164-1.933-14.4743.565
110A_G13:C35_B-0.132-0.2440.116-4.488-11.530.467
113A_G16:C32_B0.106-0.157-0.186-3.17-13.3281.526
114A_G19:C30_B-0.307-0.209-0.28.997-9.5382.17
119A_G22:C27_B0.135-0.148-0.258-8.516-9.214-4.151
14A_U6:U43_B-2.225-1.67-0.2592.734-12.5072.279
18A_U11:A37_B-0.002-0.1550.278-4.48-15.4320.897
117A_U20:U29_B-2.326-1.7160.414-10.42-15.3176.222

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.