A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 16-Oct-2019 number of released structures: 10422
Search for released structures

NDB ID: 5F8I  PDB ID: 5F8I 


RNA Base-Pairs, Stacking and other pairwise interactions

CSV Format

Nucleotide 1Nucleotide 2Base-PairsBase-StackingBase-Phosphate
5F8I|1|B|C|6025F8I|1|B|U|601s53
5F8I|1|B|C|6025F8I|1|B|U|603s35
5F8I|1|B|C|6025F8I|1|C|G|700cWW
5F8I|1|B|C|6045F8I|1|B|C|6040BPh
5F8I|1|B|C|6045F8I|1|B|U|603s53
5F8I|1|B|C|6045F8I|1|B|U|605s35
5F8I|1|B|C|6045F8I|1|C|G|698cWW
5F8I|1|B|C|6065F8I|1|B|C|6060BPh
5F8I|1|B|C|6065F8I|1|B|U|605s53
5F8I|1|B|C|6065F8I|1|B|U|607s35
5F8I|1|B|C|6065F8I|1|C|A|697ns55
5F8I|1|B|C|6065F8I|1|C|G|696cWW
5F8I|1|B|C|6085F8I|1|B|C|6080BPh
5F8I|1|B|C|6085F8I|1|B|G|609s35
5F8I|1|B|C|6085F8I|1|B|U|607s53
5F8I|1|B|C|6085F8I|1|C|A|695ns55
5F8I|1|B|C|6085F8I|1|C|G|694cWW
5F8I|1|B|G|5995F8I|1|B|G|5990BPh
5F8I|1|B|G|6005F8I|1|B|G|6000BPh
5F8I|1|B|G|6005F8I|1|B|U|601s35
5F8I|1|B|G|6095F8I|1|B|C|608s53
5F8I|1|B|G|6095F8I|1|B|G|609n0BP
5F8I|1|B|G|6095F8I|1|B|U|610s35
5F8I|1|B|G|6095F8I|1|C|C|693cWW
5F8I|1|B|G|6095F8I|1|C|G|694s55
5F8I|1|B|U|6015F8I|1|B|C|602s35
5F8I|1|B|U|6015F8I|1|B|G|600s53
5F8I|1|B|U|6015F8I|1|B|U|6010BPh
5F8I|1|B|U|6015F8I|1|C|A|701cWW
5F8I|1|B|U|6035F8I|1|B|C|602s53
5F8I|1|B|U|6035F8I|1|B|C|604s35
5F8I|1|B|U|6035F8I|1|B|U|6030BPh
5F8I|1|B|U|6035F8I|1|C|A|699cWW
5F8I|1|B|U|6035F8I|1|C|G|700s55
5F8I|1|B|U|6055F8I|1|B|C|604s53
5F8I|1|B|U|6055F8I|1|B|C|606s35
5F8I|1|B|U|6055F8I|1|B|U|6050BPh
5F8I|1|B|U|6055F8I|1|C|A|697cWW
5F8I|1|B|U|6055F8I|1|C|G|698s55
5F8I|1|B|U|6075F8I|1|B|C|606s53
5F8I|1|B|U|6075F8I|1|B|C|608s35
5F8I|1|B|U|6075F8I|1|B|U|6070BPh
5F8I|1|B|U|6075F8I|1|C|A|695cWW
5F8I|1|B|U|6075F8I|1|C|G|696s55
5F8I|1|B|U|6105F8I|1|B|G|609s53
5F8I|1|B|U|6105F8I|1|B|U|6100BPh
5F8I|1|B|U|6105F8I|1|C|A|692cWW
5F8I|1|C|A|6925F8I|1|B|U|610cWW
5F8I|1|C|A|6925F8I|1|C|A|6920BPh
5F8I|1|C|A|6925F8I|1|C|C|693s35
5F8I|1|C|A|6955F8I|1|B|C|608ns55
5F8I|1|C|A|6955F8I|1|B|U|607cWW
5F8I|1|C|A|6955F8I|1|C|A|6950BPh
5F8I|1|C|A|6955F8I|1|C|G|694s53
5F8I|1|C|A|6955F8I|1|C|G|696s35
5F8I|1|C|A|6975F8I|1|B|C|606ns55
5F8I|1|C|A|6975F8I|1|B|U|605cWW
5F8I|1|C|A|6975F8I|1|C|A|6970BPh
5F8I|1|C|A|6975F8I|1|C|G|696s53
5F8I|1|C|A|6975F8I|1|C|G|698s35
5F8I|1|C|A|6995F8I|1|B|U|603cWW
5F8I|1|C|A|6995F8I|1|C|A|6990BPh
5F8I|1|C|A|6995F8I|1|C|G|698s53
5F8I|1|C|A|6995F8I|1|C|G|700s35
5F8I|1|C|A|7015F8I|1|B|U|601cWW
5F8I|1|C|A|7015F8I|1|C|A|7010BPh
5F8I|1|C|A|7015F8I|1|C|G|700s53
5F8I|1|C|C|6935F8I|1|B|G|609cWW
5F8I|1|C|C|6935F8I|1|C|A|692s53
5F8I|1|C|C|6935F8I|1|C|C|6930BPh
5F8I|1|C|C|6935F8I|1|C|G|694s35
5F8I|1|C|G|6945F8I|1|B|C|608cWW
5F8I|1|C|G|6945F8I|1|B|G|609s55
5F8I|1|C|G|6945F8I|1|C|A|695s35
5F8I|1|C|G|6945F8I|1|C|C|693s53
5F8I|1|C|G|6945F8I|1|C|G|6940BPh
5F8I|1|C|G|6965F8I|1|B|C|606cWW
5F8I|1|C|G|6965F8I|1|B|U|607s55
5F8I|1|C|G|6965F8I|1|C|A|695s53
5F8I|1|C|G|6965F8I|1|C|A|697s35
5F8I|1|C|G|6965F8I|1|C|G|6960BPh
5F8I|1|C|G|6985F8I|1|B|C|604cWW
5F8I|1|C|G|6985F8I|1|B|U|605s55
5F8I|1|C|G|6985F8I|1|C|A|697s53
5F8I|1|C|G|6985F8I|1|C|A|699s35
5F8I|1|C|G|6985F8I|1|C|G|6980BPh
5F8I|1|C|G|7005F8I|1|B|C|602cWW
5F8I|1|C|G|7005F8I|1|B|U|603s55
5F8I|1|C|G|7005F8I|1|C|A|699s53
5F8I|1|C|G|7005F8I|1|C|A|701s35
5F8I|1|C|G|7005F8I|1|C|G|7000BPh


Base-PairsCount (10)Relative Frequency
cWW101.000
Base-PhosphateCount (20)Relative Frequency
0BPh201.000
Base-StackingCount (12)Relative Frequency
s5380.667
s5540.333

Leontis/Westhof Classification Legend

Base-Phosphate Interactions Legend

Base-Stacking Interactions Legend

Saenger Classification Legend

Correspondence of Leontis/Westhof names to Saenger numbering (table)