A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 21-Aug-2019 number of released structures: 10343
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NDB ID: 5IPN  PDB ID: 5IPN 


RNA Base-Pairs, Stacking and other pairwise interactions

CSV Format

Nucleotide 1Nucleotide 2Base-PairsBase-StackingBase-Phosphate
5IPN|1|3|A|155IPN|1|3|A|150BPh
5IPN|1|3|A|155IPN|1|3|G|16s35
5IPN|1|3|G|165IPN|1|3|A|15s53
5IPN|1|3|G|165IPN|1|3|G|160BPh
5IPN|1|3|G|165IPN|1|3|U|17s35
5IPN|1|3|U|175IPN|1|3|G|16s53
5IPN|1|3|U|175IPN|1|3|U|170BPh


Base-PairsCount (0)Relative Frequency
Base-PhosphateCount (3)Relative Frequency
0BPh31.000
Base-StackingCount (0)Relative Frequency

Leontis/Westhof Classification Legend

Base-Phosphate Interactions Legend

Base-Stacking Interactions Legend

Saenger Classification Legend

Correspondence of Leontis/Westhof names to Saenger numbering (table)