NDB ID: 5L1Z PDB ID: 5L1Z 
RNA Base-Pairs, Stacking and other pairwise interactions
CSV FormatNucleotide 1 | Nucleotide 2 | Base-Pairs | Base-Stacking | Base-Phosphate |
---|
5L1Z|1|N|A|22 | 5L1Z|1|N|A|22 | | | 0BPh |
5L1Z|1|N|A|22 | 5L1Z|1|N|G|21 | | s53 | |
5L1Z|1|N|A|22 | 5L1Z|1|N|G|21||||4_558 | | ns55 | |
5L1Z|1|N|A|22 | 5L1Z|1|N|G|26 | | | |
5L1Z|1|N|A|22 | 5L1Z|1|N|U|23 | | s35 | |
5L1Z|1|N|A|22 | 5L1Z|1|N|U|25 | | | |
5L1Z|1|N|A|22 | 5L1Z|1|N|U|25||||4_558 | | | |
5L1Z|1|N|A|22||||4_558 | 5L1Z|1|N|A|22||||4_558 | | | 0BPh |
5L1Z|1|N|A|22||||4_558 | 5L1Z|1|N|G|21 | | ns55 | |
5L1Z|1|N|A|22||||4_558 | 5L1Z|1|N|G|21||||4_558 | | s53 | |
5L1Z|1|N|A|22||||4_558 | 5L1Z|1|N|G|26||||4_558 | | | |
5L1Z|1|N|A|22||||4_558 | 5L1Z|1|N|U|23||||4_558 | | s35 | |
5L1Z|1|N|A|22||||4_558 | 5L1Z|1|N|U|25 | | | |
5L1Z|1|N|A|22||||4_558 | 5L1Z|1|N|U|25||||4_558 | | | |
5L1Z|1|N|A|27 | 5L1Z|1|N|A|27 | | | 0BPh |
5L1Z|1|N|A|27 | 5L1Z|1|N|C|37 | ncWW | | |
5L1Z|1|N|A|27 | 5L1Z|1|N|C|39 | | ns55 | |
5L1Z|1|N|A|27 | 5L1Z|1|N|G|28 | | s35 | |
5L1Z|1|N|A|27 | 5L1Z|1|N|U|38 | ncWW | | |
5L1Z|1|N|A|27||||4_558 | 5L1Z|1|N|A|27||||4_558 | | | 0BPh |
5L1Z|1|N|A|27||||4_558 | 5L1Z|1|N|C|37||||4_558 | ncWW | | |
5L1Z|1|N|A|27||||4_558 | 5L1Z|1|N|C|39||||4_558 | | ns55 | |
5L1Z|1|N|A|27||||4_558 | 5L1Z|1|N|G|28||||4_558 | | s35 | |
5L1Z|1|N|A|27||||4_558 | 5L1Z|1|N|U|38||||4_558 | ncWW | | |
5L1Z|1|N|A|35 | 5L1Z|1|N|A|35 | | | 0BPh |
5L1Z|1|N|A|35 | 5L1Z|1|N|G|32 | | | |
5L1Z|1|N|A|35 | 5L1Z|1|N|G|33 | | | n6BP |
5L1Z|1|N|A|35||||4_558 | 5L1Z|1|N|A|35||||4_558 | | | 0BPh |
5L1Z|1|N|A|35||||4_558 | 5L1Z|1|N|G|32||||4_558 | | | |
5L1Z|1|N|A|35||||4_558 | 5L1Z|1|N|G|33||||4_558 | | | n6BP |
5L1Z|1|N|C|29 | 5L1Z|1|N|C|29 | | | 0BPh |
5L1Z|1|N|C|29 | 5L1Z|1|N|C|30 | | s35 | |
5L1Z|1|N|C|29 | 5L1Z|1|N|G|28 | | s53 | |
5L1Z|1|N|C|29 | 5L1Z|1|N|G|34 | ncWW | | |
5L1Z|1|N|C|29 | 5L1Z|1|N|G|36 | ncSW | | |
5L1Z|1|N|C|29||||4_558 | 5L1Z|1|N|C|29||||4_558 | | | 0BPh |
5L1Z|1|N|C|29||||4_558 | 5L1Z|1|N|C|30||||4_558 | | s35 | |
5L1Z|1|N|C|29||||4_558 | 5L1Z|1|N|G|28||||4_558 | | s53 | |
5L1Z|1|N|C|29||||4_558 | 5L1Z|1|N|G|34||||4_558 | ncWW | | |
5L1Z|1|N|C|29||||4_558 | 5L1Z|1|N|G|36||||4_558 | ncSW | | |
5L1Z|1|N|C|30 | 5L1Z|1|N|C|29 | | s53 | |
5L1Z|1|N|C|30 | 5L1Z|1|N|C|30 | | | 0BPh |
5L1Z|1|N|C|30 | 5L1Z|1|N|G|34 | | ns33 | |
5L1Z|1|N|C|30 | 5L1Z|1|N|G|36 | | ns55 | |
5L1Z|1|N|C|30 | 5L1Z|1|N|U|31 | ncSH | | |
5L1Z|1|N|C|30||||4_558 | 5L1Z|1|N|C|29||||4_558 | | s53 | |
5L1Z|1|N|C|30||||4_558 | 5L1Z|1|N|C|30||||4_558 | | | 0BPh |
5L1Z|1|N|C|30||||4_558 | 5L1Z|1|N|G|34||||4_558 | | ns33 | |
5L1Z|1|N|C|30||||4_558 | 5L1Z|1|N|G|36||||4_558 | | ns55 | |
5L1Z|1|N|C|30||||4_558 | 5L1Z|1|N|U|31||||4_558 | ncSH | | |
5L1Z|1|N|C|37 | 5L1Z|1|N|A|27 | ncWW | | |
5L1Z|1|N|C|37 | 5L1Z|1|N|C|37 | | | 0BPh |
5L1Z|1|N|C|37 | 5L1Z|1|N|G|28 | cWW | | |
5L1Z|1|N|C|37 | 5L1Z|1|N|G|36 | | s53 | |
5L1Z|1|N|C|37 | 5L1Z|1|N|U|38 | | s35 | |
5L1Z|1|N|C|37||||4_558 | 5L1Z|1|N|A|27||||4_558 | ncWW | | |
5L1Z|1|N|C|37||||4_558 | 5L1Z|1|N|C|37||||4_558 | | | 0BPh |
5L1Z|1|N|C|37||||4_558 | 5L1Z|1|N|G|28||||4_558 | cWW | | |
5L1Z|1|N|C|37||||4_558 | 5L1Z|1|N|G|36||||4_558 | | s53 | |
5L1Z|1|N|C|37||||4_558 | 5L1Z|1|N|U|38||||4_558 | | s35 | |
5L1Z|1|N|C|39 | 5L1Z|1|N|A|27 | | ns55 | |
5L1Z|1|N|C|39 | 5L1Z|1|N|C|39 | | | 0BPh |
5L1Z|1|N|C|39 | 5L1Z|1|N|C|41||||4_558 | | ns33 | |
5L1Z|1|N|C|39 | 5L1Z|1|N|G|26 | cWW | | |
5L1Z|1|N|C|39 | 5L1Z|1|N|U|38 | | s53 | |
5L1Z|1|N|C|39 | 5L1Z|1|N|U|40 | | ns35 | |
5L1Z|1|N|C|39||||4_558 | 5L1Z|1|N|A|27||||4_558 | | ns55 | |
5L1Z|1|N|C|39||||4_558 | 5L1Z|1|N|C|39||||4_558 | | | 0BPh |
5L1Z|1|N|C|39||||4_558 | 5L1Z|1|N|G|21||||4_558 | | | 7BPh |
5L1Z|1|N|C|39||||4_558 | 5L1Z|1|N|G|26||||4_558 | cWW | | |
5L1Z|1|N|C|39||||4_558 | 5L1Z|1|N|U|38||||4_558 | | s53 | |
5L1Z|1|N|C|39||||4_558 | 5L1Z|1|N|U|40||||4_558 | | ns35 | |
5L1Z|1|N|C|41 | 5L1Z|1|N|C|41 | | | n0BP |
5L1Z|1|N|C|41 | 5L1Z|1|N|C|41||||4_558 | | s55 | n6BP |
5L1Z|1|N|C|41 | 5L1Z|1|N|U|40||||4_558 | | s33 | 7BPh |
5L1Z|1|N|C|41||||4_558 | 5L1Z|1|N|C|39 | | ns33 | |
5L1Z|1|N|C|41||||4_558 | 5L1Z|1|N|C|41 | | s55 | n6BP |
5L1Z|1|N|C|41||||4_558 | 5L1Z|1|N|C|41||||4_558 | | | n0BP |
5L1Z|1|N|C|41||||4_558 | 5L1Z|1|N|U|40 | | s33 | 7BPh |
5L1Z|1|N|G|21 | 5L1Z|1|N|A|22 | | s35 | |
5L1Z|1|N|G|21 | 5L1Z|1|N|A|22||||4_558 | | ns55 | |
5L1Z|1|N|G|21 | 5L1Z|1|N|G|21 | | | 0BPh |
5L1Z|1|N|G|21 | 5L1Z|1|N|U|25||||4_558 | | ns53 | |
5L1Z|1|N|G|21||||4_558 | 5L1Z|1|N|A|22 | | ns55 | |
5L1Z|1|N|G|21||||4_558 | 5L1Z|1|N|A|22||||4_558 | | s35 | |
5L1Z|1|N|G|21||||4_558 | 5L1Z|1|N|G|21||||4_558 | | | 0BPh |
5L1Z|1|N|G|21||||4_558 | 5L1Z|1|N|U|25 | | ns53 | |
5L1Z|1|N|G|26 | 5L1Z|1|N|A|22 | | | |
5L1Z|1|N|G|26 | 5L1Z|1|N|C|39 | cWW | | |
5L1Z|1|N|G|26 | 5L1Z|1|N|G|26 | | | 0BPh |
5L1Z|1|N|G|26 | 5L1Z|1|N|U|40 | | | |
5L1Z|1|N|G|26||||4_558 | 5L1Z|1|N|A|22||||4_558 | | | |
5L1Z|1|N|G|26||||4_558 | 5L1Z|1|N|C|39||||4_558 | cWW | | |
5L1Z|1|N|G|26||||4_558 | 5L1Z|1|N|G|26||||4_558 | | | 0BPh |
5L1Z|1|N|G|26||||4_558 | 5L1Z|1|N|U|40||||4_558 | | | |
5L1Z|1|N|G|28 | 5L1Z|1|N|A|27 | | s53 | |
5L1Z|1|N|G|28 | 5L1Z|1|N|C|29 | | s35 | |
5L1Z|1|N|G|28 | 5L1Z|1|N|C|37 | cWW | | |
5L1Z|1|N|G|28 | 5L1Z|1|N|G|28 | | | 0BPh |
5L1Z|1|N|G|28 | 5L1Z|1|N|U|38 | | s55 | |
5L1Z|1|N|G|28||||4_558 | 5L1Z|1|N|A|27||||4_558 | | s53 | |
5L1Z|1|N|G|28||||4_558 | 5L1Z|1|N|C|29||||4_558 | | s35 | |
5L1Z|1|N|G|28||||4_558 | 5L1Z|1|N|C|37||||4_558 | cWW | | |
5L1Z|1|N|G|28||||4_558 | 5L1Z|1|N|G|28||||4_558 | | | 0BPh |
5L1Z|1|N|G|28||||4_558 | 5L1Z|1|N|U|38||||4_558 | | s55 | |
5L1Z|1|N|G|33 | 5L1Z|1|N|G|34 | | | n0BP |
5L1Z|1|N|G|33||||4_558 | 5L1Z|1|N|G|34||||4_558 | | | n0BP |
5L1Z|1|N|G|34 | 5L1Z|1|N|C|29 | ncWW | | |
5L1Z|1|N|G|34 | 5L1Z|1|N|C|30 | | ns33 | |
5L1Z|1|N|G|34 | 5L1Z|1|N|G|36 | | s35 | |
5L1Z|1|N|G|34||||4_558 | 5L1Z|1|N|C|29||||4_558 | ncWW | | |
5L1Z|1|N|G|34||||4_558 | 5L1Z|1|N|C|30||||4_558 | | ns33 | |
5L1Z|1|N|G|34||||4_558 | 5L1Z|1|N|G|36||||4_558 | | s35 | |
5L1Z|1|N|G|36 | 5L1Z|1|N|C|29 | ncWS | | |
5L1Z|1|N|G|36 | 5L1Z|1|N|C|30 | | ns55 | |
5L1Z|1|N|G|36 | 5L1Z|1|N|C|37 | | s35 | |
5L1Z|1|N|G|36 | 5L1Z|1|N|G|34 | | s53 | |
5L1Z|1|N|G|36 | 5L1Z|1|N|G|36 | | | 0BPh |
5L1Z|1|N|G|36 | 5L1Z|1|N|U|31 | | s55 | |
5L1Z|1|N|G|36||||4_558 | 5L1Z|1|N|C|29||||4_558 | ncWS | | |
5L1Z|1|N|G|36||||4_558 | 5L1Z|1|N|C|30||||4_558 | | ns55 | |
5L1Z|1|N|G|36||||4_558 | 5L1Z|1|N|C|37||||4_558 | | s35 | |
5L1Z|1|N|G|36||||4_558 | 5L1Z|1|N|G|34||||4_558 | | s53 | |
5L1Z|1|N|G|36||||4_558 | 5L1Z|1|N|G|36||||4_558 | | | 0BPh |
5L1Z|1|N|G|36||||4_558 | 5L1Z|1|N|U|31||||4_558 | | s55 | |
5L1Z|1|N|U|23 | 5L1Z|1|N|A|22 | | s53 | n9BP |
5L1Z|1|N|U|23 | 5L1Z|1|N|U|23 | | | 0BPh |
5L1Z|1|N|U|23||||4_558 | 5L1Z|1|N|A|22||||4_558 | | s53 | n9BP |
5L1Z|1|N|U|23||||4_558 | 5L1Z|1|N|U|23||||4_558 | | | 0BPh |
5L1Z|1|N|U|25 | 5L1Z|1|N|A|22 | | | |
5L1Z|1|N|U|25 | 5L1Z|1|N|A|22||||4_558 | | | |
5L1Z|1|N|U|25 | 5L1Z|1|N|G|21||||4_558 | | ns35 | |
5L1Z|1|N|U|25 | 5L1Z|1|N|G|26 | | | n0BP |
5L1Z|1|N|U|25 | 5L1Z|1|N|U|25 | | | |
5L1Z|1|N|U|25 | 5L1Z|1|N|U|25||||4_558 | | | |
5L1Z|1|N|U|25||||4_558 | 5L1Z|1|N|A|22 | | | |
5L1Z|1|N|U|25||||4_558 | 5L1Z|1|N|A|22||||4_558 | | | |
5L1Z|1|N|U|25||||4_558 | 5L1Z|1|N|G|21 | | ns35 | |
5L1Z|1|N|U|25||||4_558 | 5L1Z|1|N|G|26||||4_558 | | | n0BP |
5L1Z|1|N|U|25||||4_558 | 5L1Z|1|N|U|25 | | | |
5L1Z|1|N|U|25||||4_558 | 5L1Z|1|N|U|25||||4_558 | | | |
5L1Z|1|N|U|31 | 5L1Z|1|N|C|30 | ncHS | | |
5L1Z|1|N|U|31 | 5L1Z|1|N|G|36 | | s55 | |
5L1Z|1|N|U|31 | 5L1Z|1|N|U|31 | | | 0BPh |
5L1Z|1|N|U|31||||4_558 | 5L1Z|1|N|C|30||||4_558 | ncHS | | |
5L1Z|1|N|U|31||||4_558 | 5L1Z|1|N|G|36||||4_558 | | s55 | |
5L1Z|1|N|U|31||||4_558 | 5L1Z|1|N|U|31||||4_558 | | | 0BPh |
5L1Z|1|N|U|38 | 5L1Z|1|N|A|27 | ncWW | | |
5L1Z|1|N|U|38 | 5L1Z|1|N|C|37 | | s53 | |
5L1Z|1|N|U|38 | 5L1Z|1|N|C|39 | | s35 | |
5L1Z|1|N|U|38 | 5L1Z|1|N|G|28 | | s55 | |
5L1Z|1|N|U|38 | 5L1Z|1|N|U|38 | | | 0BPh |
5L1Z|1|N|U|38||||4_558 | 5L1Z|1|N|A|27||||4_558 | ncWW | | |
5L1Z|1|N|U|38||||4_558 | 5L1Z|1|N|C|37||||4_558 | | s53 | |
5L1Z|1|N|U|38||||4_558 | 5L1Z|1|N|C|39||||4_558 | | s35 | |
5L1Z|1|N|U|38||||4_558 | 5L1Z|1|N|G|28||||4_558 | | s55 | |
5L1Z|1|N|U|38||||4_558 | 5L1Z|1|N|U|38||||4_558 | | | 0BPh |
5L1Z|1|N|U|40 | 5L1Z|1|N|C|39 | | ns53 | |
5L1Z|1|N|U|40 | 5L1Z|1|N|C|41||||4_558 | | s33 | |
5L1Z|1|N|U|40 | 5L1Z|1|N|G|26 | | | |
5L1Z|1|N|U|40 | 5L1Z|1|N|U|40 | | | 0BPh |
5L1Z|1|N|U|40||||4_558 | 5L1Z|1|N|C|39||||4_558 | | ns53 | |
5L1Z|1|N|U|40||||4_558 | 5L1Z|1|N|C|41 | | s33 | |
5L1Z|1|N|U|40||||4_558 | 5L1Z|1|N|G|26||||4_558 | | | |
5L1Z|1|N|U|40||||4_558 | 5L1Z|1|N|U|40||||4_558 | | | 0BPh |
Base-Pairs | Count (4) | Relative Frequency |
---|
cWW | 4 | 1.000 |
Base-Phosphate | Count (33) | Relative Frequency |
---|
7BPh | 3 | 0.091 |
0BPh | 30 | 0.909 |
Base-Stacking | Count (15) | Relative Frequency |
---|
s33 | 2 | 0.133 |
s53 | 8 | 0.533 |
s55 | 5 | 0.333 |