A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 21-Sep-2022 number of released structures: 12282
Search for released structures

NDB ID: 5L1Z  PDB ID: 5L1Z 

RNA Base-Pairs, Stacking and other pairwise interactions

CSV Format

Nucleotide 1Nucleotide 2Base-PairsBase-StackingBase-Phosphate
5L1Z|1|N|A|225L1Z|1|N|A|220BPh
5L1Z|1|N|A|225L1Z|1|N|G|21s53
5L1Z|1|N|A|225L1Z|1|N|G|21||||4_558ns55
5L1Z|1|N|A|225L1Z|1|N|G|26
5L1Z|1|N|A|225L1Z|1|N|U|23s35
5L1Z|1|N|A|225L1Z|1|N|U|25
5L1Z|1|N|A|225L1Z|1|N|U|25||||4_558
5L1Z|1|N|A|22||||4_5585L1Z|1|N|A|22||||4_5580BPh
5L1Z|1|N|A|22||||4_5585L1Z|1|N|G|21ns55
5L1Z|1|N|A|22||||4_5585L1Z|1|N|G|21||||4_558s53
5L1Z|1|N|A|22||||4_5585L1Z|1|N|G|26||||4_558
5L1Z|1|N|A|22||||4_5585L1Z|1|N|U|23||||4_558s35
5L1Z|1|N|A|22||||4_5585L1Z|1|N|U|25
5L1Z|1|N|A|22||||4_5585L1Z|1|N|U|25||||4_558
5L1Z|1|N|A|275L1Z|1|N|A|270BPh
5L1Z|1|N|A|275L1Z|1|N|C|37ncWW
5L1Z|1|N|A|275L1Z|1|N|C|39ns55
5L1Z|1|N|A|275L1Z|1|N|G|28s35
5L1Z|1|N|A|275L1Z|1|N|U|38ncWW
5L1Z|1|N|A|27||||4_5585L1Z|1|N|A|27||||4_5580BPh
5L1Z|1|N|A|27||||4_5585L1Z|1|N|C|37||||4_558ncWW
5L1Z|1|N|A|27||||4_5585L1Z|1|N|C|39||||4_558ns55
5L1Z|1|N|A|27||||4_5585L1Z|1|N|G|28||||4_558s35
5L1Z|1|N|A|27||||4_5585L1Z|1|N|U|38||||4_558ncWW
5L1Z|1|N|A|355L1Z|1|N|A|350BPh
5L1Z|1|N|A|355L1Z|1|N|G|32
5L1Z|1|N|A|355L1Z|1|N|G|33n6BP
5L1Z|1|N|A|35||||4_5585L1Z|1|N|A|35||||4_5580BPh
5L1Z|1|N|A|35||||4_5585L1Z|1|N|G|32||||4_558
5L1Z|1|N|A|35||||4_5585L1Z|1|N|G|33||||4_558n6BP
5L1Z|1|N|C|295L1Z|1|N|C|290BPh
5L1Z|1|N|C|295L1Z|1|N|C|30s35
5L1Z|1|N|C|295L1Z|1|N|G|28s53
5L1Z|1|N|C|295L1Z|1|N|G|34ncWW
5L1Z|1|N|C|295L1Z|1|N|G|36ncSW
5L1Z|1|N|C|29||||4_5585L1Z|1|N|C|29||||4_5580BPh
5L1Z|1|N|C|29||||4_5585L1Z|1|N|C|30||||4_558s35
5L1Z|1|N|C|29||||4_5585L1Z|1|N|G|28||||4_558s53
5L1Z|1|N|C|29||||4_5585L1Z|1|N|G|34||||4_558ncWW
5L1Z|1|N|C|29||||4_5585L1Z|1|N|G|36||||4_558ncSW
5L1Z|1|N|C|305L1Z|1|N|C|29s53
5L1Z|1|N|C|305L1Z|1|N|C|300BPh
5L1Z|1|N|C|305L1Z|1|N|G|34ns33
5L1Z|1|N|C|305L1Z|1|N|G|36ns55
5L1Z|1|N|C|305L1Z|1|N|U|31ncSH
5L1Z|1|N|C|30||||4_5585L1Z|1|N|C|29||||4_558s53
5L1Z|1|N|C|30||||4_5585L1Z|1|N|C|30||||4_5580BPh
5L1Z|1|N|C|30||||4_5585L1Z|1|N|G|34||||4_558ns33
5L1Z|1|N|C|30||||4_5585L1Z|1|N|G|36||||4_558ns55
5L1Z|1|N|C|30||||4_5585L1Z|1|N|U|31||||4_558ncSH
5L1Z|1|N|C|375L1Z|1|N|A|27ncWW
5L1Z|1|N|C|375L1Z|1|N|C|370BPh
5L1Z|1|N|C|375L1Z|1|N|G|28cWW
5L1Z|1|N|C|375L1Z|1|N|G|36s53
5L1Z|1|N|C|375L1Z|1|N|U|38s35
5L1Z|1|N|C|37||||4_5585L1Z|1|N|A|27||||4_558ncWW
5L1Z|1|N|C|37||||4_5585L1Z|1|N|C|37||||4_5580BPh
5L1Z|1|N|C|37||||4_5585L1Z|1|N|G|28||||4_558cWW
5L1Z|1|N|C|37||||4_5585L1Z|1|N|G|36||||4_558s53
5L1Z|1|N|C|37||||4_5585L1Z|1|N|U|38||||4_558s35
5L1Z|1|N|C|395L1Z|1|N|A|27ns55
5L1Z|1|N|C|395L1Z|1|N|C|390BPh
5L1Z|1|N|C|395L1Z|1|N|C|41||||4_558ns33
5L1Z|1|N|C|395L1Z|1|N|G|26cWW
5L1Z|1|N|C|395L1Z|1|N|U|38s53
5L1Z|1|N|C|395L1Z|1|N|U|40ns35
5L1Z|1|N|C|39||||4_5585L1Z|1|N|A|27||||4_558ns55
5L1Z|1|N|C|39||||4_5585L1Z|1|N|C|39||||4_5580BPh
5L1Z|1|N|C|39||||4_5585L1Z|1|N|G|21||||4_5587BPh
5L1Z|1|N|C|39||||4_5585L1Z|1|N|G|26||||4_558cWW
5L1Z|1|N|C|39||||4_5585L1Z|1|N|U|38||||4_558s53
5L1Z|1|N|C|39||||4_5585L1Z|1|N|U|40||||4_558ns35
5L1Z|1|N|C|415L1Z|1|N|C|41n0BP
5L1Z|1|N|C|415L1Z|1|N|C|41||||4_558s55n6BP
5L1Z|1|N|C|415L1Z|1|N|U|40||||4_558s337BPh
5L1Z|1|N|C|41||||4_5585L1Z|1|N|C|39ns33
5L1Z|1|N|C|41||||4_5585L1Z|1|N|C|41s55n6BP
5L1Z|1|N|C|41||||4_5585L1Z|1|N|C|41||||4_558n0BP
5L1Z|1|N|C|41||||4_5585L1Z|1|N|U|40s337BPh
5L1Z|1|N|G|215L1Z|1|N|A|22s35
5L1Z|1|N|G|215L1Z|1|N|A|22||||4_558ns55
5L1Z|1|N|G|215L1Z|1|N|G|210BPh
5L1Z|1|N|G|215L1Z|1|N|U|25||||4_558ns53
5L1Z|1|N|G|21||||4_5585L1Z|1|N|A|22ns55
5L1Z|1|N|G|21||||4_5585L1Z|1|N|A|22||||4_558s35
5L1Z|1|N|G|21||||4_5585L1Z|1|N|G|21||||4_5580BPh
5L1Z|1|N|G|21||||4_5585L1Z|1|N|U|25ns53
5L1Z|1|N|G|265L1Z|1|N|A|22
5L1Z|1|N|G|265L1Z|1|N|C|39cWW
5L1Z|1|N|G|265L1Z|1|N|G|260BPh
5L1Z|1|N|G|265L1Z|1|N|U|40
5L1Z|1|N|G|26||||4_5585L1Z|1|N|A|22||||4_558
5L1Z|1|N|G|26||||4_5585L1Z|1|N|C|39||||4_558cWW
5L1Z|1|N|G|26||||4_5585L1Z|1|N|G|26||||4_5580BPh
5L1Z|1|N|G|26||||4_5585L1Z|1|N|U|40||||4_558
5L1Z|1|N|G|285L1Z|1|N|A|27s53
5L1Z|1|N|G|285L1Z|1|N|C|29s35
5L1Z|1|N|G|285L1Z|1|N|C|37cWW
5L1Z|1|N|G|285L1Z|1|N|G|280BPh
5L1Z|1|N|G|285L1Z|1|N|U|38s55
5L1Z|1|N|G|28||||4_5585L1Z|1|N|A|27||||4_558s53
5L1Z|1|N|G|28||||4_5585L1Z|1|N|C|29||||4_558s35
5L1Z|1|N|G|28||||4_5585L1Z|1|N|C|37||||4_558cWW
5L1Z|1|N|G|28||||4_5585L1Z|1|N|G|28||||4_5580BPh
5L1Z|1|N|G|28||||4_5585L1Z|1|N|U|38||||4_558s55
5L1Z|1|N|G|335L1Z|1|N|G|34n0BP
5L1Z|1|N|G|33||||4_5585L1Z|1|N|G|34||||4_558n0BP
5L1Z|1|N|G|345L1Z|1|N|C|29ncWW
5L1Z|1|N|G|345L1Z|1|N|C|30ns33
5L1Z|1|N|G|345L1Z|1|N|G|36s35
5L1Z|1|N|G|34||||4_5585L1Z|1|N|C|29||||4_558ncWW
5L1Z|1|N|G|34||||4_5585L1Z|1|N|C|30||||4_558ns33
5L1Z|1|N|G|34||||4_5585L1Z|1|N|G|36||||4_558s35
5L1Z|1|N|G|365L1Z|1|N|C|29ncWS
5L1Z|1|N|G|365L1Z|1|N|C|30ns55
5L1Z|1|N|G|365L1Z|1|N|C|37s35
5L1Z|1|N|G|365L1Z|1|N|G|34s53
5L1Z|1|N|G|365L1Z|1|N|G|360BPh
5L1Z|1|N|G|365L1Z|1|N|U|31s55
5L1Z|1|N|G|36||||4_5585L1Z|1|N|C|29||||4_558ncWS
5L1Z|1|N|G|36||||4_5585L1Z|1|N|C|30||||4_558ns55
5L1Z|1|N|G|36||||4_5585L1Z|1|N|C|37||||4_558s35
5L1Z|1|N|G|36||||4_5585L1Z|1|N|G|34||||4_558s53
5L1Z|1|N|G|36||||4_5585L1Z|1|N|G|36||||4_5580BPh
5L1Z|1|N|G|36||||4_5585L1Z|1|N|U|31||||4_558s55
5L1Z|1|N|U|235L1Z|1|N|A|22s53n9BP
5L1Z|1|N|U|235L1Z|1|N|U|230BPh
5L1Z|1|N|U|23||||4_5585L1Z|1|N|A|22||||4_558s53n9BP
5L1Z|1|N|U|23||||4_5585L1Z|1|N|U|23||||4_5580BPh
5L1Z|1|N|U|255L1Z|1|N|A|22
5L1Z|1|N|U|255L1Z|1|N|A|22||||4_558
5L1Z|1|N|U|255L1Z|1|N|G|21||||4_558ns35
5L1Z|1|N|U|255L1Z|1|N|G|26n0BP
5L1Z|1|N|U|255L1Z|1|N|U|25
5L1Z|1|N|U|255L1Z|1|N|U|25||||4_558
5L1Z|1|N|U|25||||4_5585L1Z|1|N|A|22
5L1Z|1|N|U|25||||4_5585L1Z|1|N|A|22||||4_558
5L1Z|1|N|U|25||||4_5585L1Z|1|N|G|21ns35
5L1Z|1|N|U|25||||4_5585L1Z|1|N|G|26||||4_558n0BP
5L1Z|1|N|U|25||||4_5585L1Z|1|N|U|25
5L1Z|1|N|U|25||||4_5585L1Z|1|N|U|25||||4_558
5L1Z|1|N|U|315L1Z|1|N|C|30ncHS
5L1Z|1|N|U|315L1Z|1|N|G|36s55
5L1Z|1|N|U|315L1Z|1|N|U|310BPh
5L1Z|1|N|U|31||||4_5585L1Z|1|N|C|30||||4_558ncHS
5L1Z|1|N|U|31||||4_5585L1Z|1|N|G|36||||4_558s55
5L1Z|1|N|U|31||||4_5585L1Z|1|N|U|31||||4_5580BPh
5L1Z|1|N|U|385L1Z|1|N|A|27ncWW
5L1Z|1|N|U|385L1Z|1|N|C|37s53
5L1Z|1|N|U|385L1Z|1|N|C|39s35
5L1Z|1|N|U|385L1Z|1|N|G|28s55
5L1Z|1|N|U|385L1Z|1|N|U|380BPh
5L1Z|1|N|U|38||||4_5585L1Z|1|N|A|27||||4_558ncWW
5L1Z|1|N|U|38||||4_5585L1Z|1|N|C|37||||4_558s53
5L1Z|1|N|U|38||||4_5585L1Z|1|N|C|39||||4_558s35
5L1Z|1|N|U|38||||4_5585L1Z|1|N|G|28||||4_558s55
5L1Z|1|N|U|38||||4_5585L1Z|1|N|U|38||||4_5580BPh
5L1Z|1|N|U|405L1Z|1|N|C|39ns53
5L1Z|1|N|U|405L1Z|1|N|C|41||||4_558s33
5L1Z|1|N|U|405L1Z|1|N|G|26
5L1Z|1|N|U|405L1Z|1|N|U|400BPh
5L1Z|1|N|U|40||||4_5585L1Z|1|N|C|39||||4_558ns53
5L1Z|1|N|U|40||||4_5585L1Z|1|N|C|41s33
5L1Z|1|N|U|40||||4_5585L1Z|1|N|G|26||||4_558
5L1Z|1|N|U|40||||4_5585L1Z|1|N|U|40||||4_5580BPh


Base-PairsCount (4)Relative Frequency
cWW41.000
Base-PhosphateCount (33)Relative Frequency
7BPh30.091
0BPh300.909
Base-StackingCount (15)Relative Frequency
s3320.133
s5380.533
s5550.333

Leontis/Westhof Classification Legend

Base-Phosphate Interactions Legend

Base-Stacking Interactions Legend

Saenger Classification Legend

Correspondence of Leontis/Westhof names to Saenger numbering (table)

ndbadmin@ndbserver.rutgers.edui ©1995-2022 The Nucleic Acid Database Project | Rutgers, The State University of New Jersey