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As of 16-Oct-2019 number of released structures: 10422
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NDB ID: 5M3H  PDB ID: 5M3H 


RNA Base-Pairs, Stacking and other pairwise interactions

CSV Format

Nucleotide 1Nucleotide 2Base-PairsBase-StackingBase-Phosphate
5M3H|1|R|A|25M3H|1|R|A|20BPh
5M3H|1|R|A|25M3H|1|R|U|1s53
5M3H|1|R|A|25M3H|1|R|U|3s35
5M3H|1|R|A|45M3H|1|R|A|4n0BP
5M3H|1|R|A|45M3H|1|R|C|5s35
5M3H|1|R|A|45M3H|1|R|U|3s53
5M3H|1|R|C|115M3H|1|R|C|110BPh
5M3H|1|R|C|55M3H|1|R|A|4s53
5M3H|1|R|C|55M3H|1|R|C|6s35
5M3H|1|R|C|55M3H|1|V|G|15cWW
5M3H|1|R|C|65M3H|1|R|C|5s53
5M3H|1|R|C|65M3H|1|R|C|60BPh
5M3H|1|R|C|65M3H|1|R|U|7s35
5M3H|1|R|C|65M3H|1|V|G|14cWW
5M3H|1|R|C|65M3H|1|V|G|15s55
5M3H|1|R|C|85M3H|1|R|C|80BPh
5M3H|1|R|C|85M3H|1|R|U|7s53
5M3H|1|R|C|85M3H|1|R|U|9s35
5M3H|1|R|C|85M3H|1|V|A|13ns55
5M3H|1|R|C|85M3H|1|V|G|12cWW
5M3H|1|R|G|105M3H|1|R|G|101BPh
5M3H|1|R|G|105M3H|1|R|U|9s33
5M3H|1|R|U|15M3H|1|R|A|2s35
5M3H|1|R|U|15M3H|1|R|U|10BPh
5M3H|1|R|U|125M3H|1|R|U|120BPh
5M3H|1|R|U|35M3H|1|R|A|2s53
5M3H|1|R|U|35M3H|1|R|A|4s35
5M3H|1|R|U|35M3H|1|R|U|30BPh
5M3H|1|R|U|75M3H|1|R|C|6s53
5M3H|1|R|U|75M3H|1|R|C|8s35
5M3H|1|R|U|75M3H|1|R|U|70BPh
5M3H|1|R|U|75M3H|1|V|A|13cWW
5M3H|1|R|U|75M3H|1|V|G|14s55
5M3H|1|R|U|95M3H|1|R|C|8s53
5M3H|1|R|U|95M3H|1|R|G|10s33
5M3H|1|R|U|95M3H|1|R|U|90BPh
5M3H|1|R|U|95M3H|1|V|A|11cWW
5M3H|1|R|U|95M3H|1|V|G|12s55
5M3H|1|V|A|15M3H|1|V|A|10BPh
5M3H|1|V|A|15M3H|1|V|A|10ntHS
5M3H|1|V|A|15M3H|1|V|G|2s35
5M3H|1|V|A|105M3H|1|V|A|1ntSH
5M3H|1|V|A|105M3H|1|V|A|100BPh
5M3H|1|V|A|105M3H|1|V|C|9s53
5M3H|1|V|A|115M3H|1|R|U|9cWW
5M3H|1|V|A|115M3H|1|V|G|12s35
5M3H|1|V|A|135M3H|1|R|C|8ns55
5M3H|1|V|A|135M3H|1|R|U|7cWW
5M3H|1|V|A|135M3H|1|V|A|130BPh
5M3H|1|V|A|135M3H|1|V|G|12s53
5M3H|1|V|A|135M3H|1|V|G|14s35
5M3H|1|V|A|45M3H|1|V|A|40BPh
5M3H|1|V|A|45M3H|1|V|A|7cSW
5M3H|1|V|A|45M3H|1|V|G|5s33
5M3H|1|V|A|45M3H|1|V|U|3s53
5M3H|1|V|A|75M3H|1|V|A|4cWS
5M3H|1|V|A|75M3H|1|V|A|8s35
5M3H|1|V|A|85M3H|1|V|A|7s53
5M3H|1|V|A|85M3H|1|V|C|9s35
5M3H|1|V|A|85M3H|1|V|U|3cWW
5M3H|1|V|C|95M3H|1|V|A|10s35
5M3H|1|V|C|95M3H|1|V|A|8s53
5M3H|1|V|C|95M3H|1|V|C|90BPh
5M3H|1|V|C|95M3H|1|V|G|2cWW
5M3H|1|V|G|125M3H|1|R|C|8cWW
5M3H|1|V|G|125M3H|1|R|U|9s55
5M3H|1|V|G|125M3H|1|V|A|11s53
5M3H|1|V|G|125M3H|1|V|A|13s35
5M3H|1|V|G|125M3H|1|V|G|120BPh
5M3H|1|V|G|145M3H|1|R|C|6cWW
5M3H|1|V|G|145M3H|1|R|U|7s55
5M3H|1|V|G|145M3H|1|V|A|13s53
5M3H|1|V|G|145M3H|1|V|G|140BPh
5M3H|1|V|G|145M3H|1|V|G|15s35
5M3H|1|V|G|155M3H|1|R|C|5cWW
5M3H|1|V|G|155M3H|1|R|C|6s55
5M3H|1|V|G|155M3H|1|V|G|14s53
5M3H|1|V|G|155M3H|1|V|G|150BPh
5M3H|1|V|G|165M3H|1|V|G|16
5M3H|1|V|G|25M3H|1|V|A|1s53
5M3H|1|V|G|25M3H|1|V|C|9cWW
5M3H|1|V|G|25M3H|1|V|G|20BPh
5M3H|1|V|G|25M3H|1|V|U|3s35
5M3H|1|V|G|55M3H|1|V|A|4s33
5M3H|1|V|G|55M3H|1|V|G|51BPh
5M3H|1|V|U|35M3H|1|V|A|4s35
5M3H|1|V|U|35M3H|1|V|A|8cWW
5M3H|1|V|U|35M3H|1|V|G|2s53
5M3H|1|V|U|35M3H|1|V|U|30BPh
5M3H|1|V|U|65M3H|1|V|U|60BPh


Base-PairsCount (8)Relative Frequency
cWW70.875
cWS10.125
Base-PhosphateCount (22)Relative Frequency
1BPh20.091
0BPh200.909
Base-StackingCount (11)Relative Frequency
s3320.182
s5360.545
s5530.273

Leontis/Westhof Classification Legend

Base-Phosphate Interactions Legend

Base-Stacking Interactions Legend

Saenger Classification Legend

Correspondence of Leontis/Westhof names to Saenger numbering (table)