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As of 22-Nov-2017 number of released structures: 9218
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NDB ID: 5O6U  PDB ID: 5O6U 


RNA Base-Pairs, Stacking and other pairwise interactions

CSV Format

Nucleotide 1Nucleotide 2Base-PairsBase-StackingBase-Phosphate
5O6U|1|A|A|115O6U|1|A|A|110BPh
5O6U|1|A|A|115O6U|1|A|C|10s53
5O6U|1|A|A|125O6U|1|A|A|120BPh
5O6U|1|A|A|125O6U|1|A|A|13s35
5O6U|1|A|A|135O6U|1|A|A|12s53
5O6U|1|A|A|135O6U|1|A|A|130BPh
5O6U|1|A|A|175O6U|1|A|A|170BPh
5O6U|1|A|A|175O6U|1|A|U|16s53
5O6U|1|A|A|195O6U|1|A|A|190BPh
5O6U|1|A|A|195O6U|1|A|U|18s53
5O6U|1|A|A|205O6U|1|A|C|22
5O6U|1|A|A|205O6U|1|A|C|26n0BP
5O6U|1|A|A|275O6U|1|A|A|270BPh
5O6U|1|A|A|355O6U|1|A|A|350BPh
5O6U|1|A|A|355O6U|1|A|A|37s35
5O6U|1|A|A|355O6U|1|A|C|34s53
5O6U|1|A|A|355O6U|1|A|G|33ntHS
5O6U|1|A|A|375O6U|1|A|A|35s53
5O6U|1|A|A|375O6U|1|A|C|32
5O6U|1|A|A|375O6U|1|A|C|360BPh
5O6U|1|A|A|375O6U|1|A|G|33tHS
5O6U|1|A|A|375O6U|1|A|G|38s35
5O6U|1|A|A|45O6U|1|A|G|5s35
5O6U|1|A|A|65O6U|1|A|A|60BPh
5O6U|1|A|A|65O6U|1|A|A|7s35
5O6U|1|A|A|65O6U|1|A|G|5ns53
5O6U|1|A|A|75O6U|1|A|A|6s53
5O6U|1|A|A|75O6U|1|A|A|70BPh
5O6U|1|A|A|85O6U|1|A|C|10n0BP
5O6U|1|A|A|85O6U|1|A|G|9cHS0BPh
5O6U|1|A|C|15O6U|1|A|U|2
5O6U|1|A|C|105O6U|1|A|A|11s35
5O6U|1|A|C|105O6U|1|A|C|10n0BP
5O6U|1|A|C|105O6U|1|A|G|9s53
5O6U|1|A|C|145O6U|1|A|C|15n0BP
5O6U|1|A|C|155O6U|1|A|U|16s35
5O6U|1|A|C|215O6U|1|A|C|22s35
5O6U|1|A|C|225O6U|1|A|A|20
5O6U|1|A|C|225O6U|1|A|C|21s53
5O6U|1|A|C|225O6U|1|A|C|220BPh
5O6U|1|A|C|265O6U|1|A|U|25ns53
5O6U|1|A|C|285O6U|1|A|C|280BPh
5O6U|1|A|C|285O6U|1|A|C|29s35
5O6U|1|A|C|285O6U|1|A|G|42cWW
5O6U|1|A|C|295O6U|1|A|C|28s53
5O6U|1|A|C|295O6U|1|A|C|290BPh
5O6U|1|A|C|295O6U|1|A|G|30s35
5O6U|1|A|C|295O6U|1|A|G|41cWW
5O6U|1|A|C|295O6U|1|A|G|42ns55
5O6U|1|A|C|315O6U|1|A|C|310BPh
5O6U|1|A|C|315O6U|1|A|C|32s35
5O6U|1|A|C|315O6U|1|A|G|30s53
5O6U|1|A|C|315O6U|1|A|G|39cWW
5O6U|1|A|C|325O6U|1|A|A|37
5O6U|1|A|C|325O6U|1|A|C|31s53
5O6U|1|A|C|325O6U|1|A|C|320BPh
5O6U|1|A|C|325O6U|1|A|G|33s35
5O6U|1|A|C|325O6U|1|A|G|38cWW
5O6U|1|A|C|325O6U|1|A|G|39s55
5O6U|1|A|C|345O6U|1|A|A|35s35
5O6U|1|A|C|345O6U|1|A|C|340BPh
5O6U|1|A|C|365O6U|1|A|C|360BPh
5O6U|1|A|C|405O6U|1|A|C|400BPh
5O6U|1|A|C|405O6U|1|A|G|30cWW
5O6U|1|A|C|405O6U|1|A|G|39s53
5O6U|1|A|C|405O6U|1|A|G|41s35
5O6U|1|A|G|305O6U|1|A|C|29s53
5O6U|1|A|G|305O6U|1|A|C|31s35
5O6U|1|A|G|305O6U|1|A|C|40cWW
5O6U|1|A|G|305O6U|1|A|G|300BPh
5O6U|1|A|G|305O6U|1|A|G|41s55
5O6U|1|A|G|335O6U|1|A|A|35ntSH
5O6U|1|A|G|335O6U|1|A|A|37tSH
5O6U|1|A|G|335O6U|1|A|C|32s53
5O6U|1|A|G|335O6U|1|A|C|363BPh
5O6U|1|A|G|335O6U|1|A|G|330BPh
5O6U|1|A|G|385O6U|1|A|A|37s53
5O6U|1|A|G|385O6U|1|A|C|32cWW
5O6U|1|A|G|385O6U|1|A|G|380BPh
5O6U|1|A|G|385O6U|1|A|G|39s35
5O6U|1|A|G|395O6U|1|A|C|31cWW
5O6U|1|A|G|395O6U|1|A|C|32s55
5O6U|1|A|G|395O6U|1|A|C|40s35
5O6U|1|A|G|395O6U|1|A|G|38s53
5O6U|1|A|G|415O6U|1|A|C|29cWW
5O6U|1|A|G|415O6U|1|A|C|40s53
5O6U|1|A|G|415O6U|1|A|G|30s55
5O6U|1|A|G|415O6U|1|A|G|410BPh
5O6U|1|A|G|415O6U|1|A|G|42s35
5O6U|1|A|G|425O6U|1|A|C|28cWW
5O6U|1|A|G|425O6U|1|A|C|29ns55
5O6U|1|A|G|425O6U|1|A|G|41s53
5O6U|1|A|G|425O6U|1|A|G|420BPh
5O6U|1|A|G|55O6U|1|A|A|4s53
5O6U|1|A|G|55O6U|1|A|A|6ns35
5O6U|1|A|G|55O6U|1|A|G|50BPh
5O6U|1|A|G|95O6U|1|A|A|8cSH
5O6U|1|A|G|95O6U|1|A|C|10s35
5O6U|1|A|U|165O6U|1|A|A|17s35
5O6U|1|A|U|165O6U|1|A|C|15s53
5O6U|1|A|U|165O6U|1|A|U|160BPh
5O6U|1|A|U|185O6U|1|A|A|19s35
5O6U|1|A|U|185O6U|1|A|U|180BPh
5O6U|1|A|U|25O6U|1|A|C|1
5O6U|1|A|U|245O6U|1|A|U|240BPh
5O6U|1|A|U|255O6U|1|A|C|26ns35
5O6U|1|A|U|255O6U|1|A|U|250BPh
5O6U|1|A|U|35O6U|1|A|U|30BPh


Base-PairsCount (7)Relative Frequency
cWW50.714
cHS10.143
tHS10.143
Base-PhosphateCount (31)Relative Frequency
3BPh10.032
0BPh300.968
Base-StackingCount (9)Relative Frequency
s5370.778
s5520.222

Leontis/Westhof Classification Legend

Base-Phosphate Interactions Legend

Base-Stacking Interactions Legend

Saenger Classification Legend

Correspondence of Leontis/Westhof names to Saenger numbering (table)