A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 11-Dec-2019 number of released structures: 10507
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NDB ID: 6AKH  PDB ID: 6AKH 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
16T_DA7:DT3_P0.051-0.1520.3299.665-15.321.343
11T_DC1:DG4_D0.319-0.1570.282-10.676-9.011-6.51
14T_DC4:DG1_D0.294-0.113-0.2113.381.611-0.804
17T_DC8:DG2_P0.286-0.172-0.14110.836-12.1540.019
12T_DG2:DC3_D0.270.3230.177-1.029-10.935-0.13
13T_DG3:DC2_D-0.199-0.1790.292.007-8.229-2.5
18T_DG9:DC1_P-0.178-0.110.108-1.927-10.019-0.724
15T_DT6:DA4_P0.028-0.153-0.0733.8741.2512.743

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.