6AKH: Base Pair Morphology Step Parameters

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NDB ID: 6AKH PDB ID: 6AKH

Base Pair Morphology Step Parameters

CSV Format

Model Number	Step Number	Step Name	Shift	Slide	Rise	Tilt	Roll	Twist	X-Displacement	Y-Displacement	Helical Rise	Inclination	Tip	Helical Twist
1	5	TT_DA7DC8:DG2DT3_PP	-0.636	-1.251	3.333	1.466	2.392	36.482	-2.322	1.216	3.22	3.814	-2.338	36.586
1	1	TT_DC1DG2:DC3DG4_DD	-0.528	0.576	3.19	4.386	4.559	31.588	0.244	1.717	3.141	8.272	-7.957	32.199
1	6	TT_DC8DG9:DC1DG2_PP	-0.785	-1.3	3.487	-5.373	7.088	35.471	-3.097	0.475	3.257	11.414	8.652	36.534
1	2	TT_DG2DG3:DC2DC3_DD	0.789	0.176	3.322	-3.138	6.297	34.695	-0.648	-1.766	3.222	10.427	5.196	35.38
1	3	TT_DG3DC4:DG1DC2_DD	0.468	0.111	3.092	4.761	2.022	26.677	-0.251	0.152	3.126	4.33	-10.197	27.165
1	4	TT_DT6DA7:DT3DA4_PP	0.342	-1.104	3.113	-4.742	4.67	30.413	-2.879	-1.472	2.831	8.771	8.906	31.116

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.