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A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 11-Dec-2019 number of released structures: 10507
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NDB ID:
6AKH
PDB ID:
6AKH
 
Base Pair Morphology Step Parameters
CSV Format
Model Number
Step Number
Step Name
Shift
Slide
Rise
Tilt
Roll
Twist
X-Displacement
Y-Displacement
Helical Rise
Inclination
Tip
Helical Twist
1
5
TT_DA7DC8:DG2DT3_PP
-0.636
-1.251
3.333
1.466
2.392
36.482
-2.322
1.216
3.22
3.814
-2.338
36.586
1
1
TT_DC1DG2:DC3DG4_DD
-0.528
0.576
3.19
4.386
4.559
31.588
0.244
1.717
3.141
8.272
-7.957
32.199
1
6
TT_DC8DG9:DC1DG2_PP
-0.785
-1.3
3.487
-5.373
7.088
35.471
-3.097
0.475
3.257
11.414
8.652
36.534
1
2
TT_DG2DG3:DC2DC3_DD
0.789
0.176
3.322
-3.138
6.297
34.695
-0.648
-1.766
3.222
10.427
5.196
35.38
1
3
TT_DG3DC4:DG1DC2_DD
0.468
0.111
3.092
4.761
2.022
26.677
-0.251
0.152
3.126
4.33
-10.197
27.165
1
4
TT_DT6DA7:DT3DA4_PP
0.342
-1.104
3.113
-4.742
4.67
30.413
-2.879
-1.472
2.831
8.771
8.906
31.116
The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures',
Nucleic Acids Res
.
31(17)
, 5108-21. Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures',
Nat Protoc
.
3(7)
, 1213-27.