A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 11-May-2022 number of released structures: 12077
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NDB ID: 6AMA  PDB ID: 6AMA 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
12N_DA72:DT108_R-1.631-0.347-1.02-30.682-32.842-4.785
17N_DA77:DT103_R-1.016-0.3950.363-4.766-18.1762.951
18N_DA78:DT102_R-0.277-0.6741.114-5.642-17.065-1.029
111N_DA81:DT99_R-0.3420.0810.168-0.839-1.9630.771
115N_DA86:DT94_R0.9110.192-0.547-14.255-5.6727.54
116N_DA87:DT93_R0.8940.021-0.051-14.49-2.9365.983
119N_DA90:DT90_R1.671-0.144-1.149-29.334-7.553-6.11
124N_DA95:DT85_R1.152-0.269-0.590.11-13.225-0.813
125N_DA96:DT84_R1.0-0.0510.066-3.86-25.61212.448
128N_DA99:DT81_R1.031-0.199-0.489-7.434-3.77-2.572
133N_DA104:DT76_R0.695-0.269-0.144-7.6651.198-1.98
134N_DA105:DT75_R1.45-0.3781.124-0.835-3.713-8.98
137N_DA108:DT72_R0.3850.095-0.924-22.875-10.373-1.616
142N_DA113:DT67_R0.790.281-0.65-3.988-21.988-1.292
143N_DA114:DT66_R-0.673-0.4840.14-8.353-13.529-2.656
146N_DA117:DT63_R-0.5060.008-0.785-15.489-22.9438.753
150N_DA122:DT58_R0.365-0.049-0.2511.494-15.37-7.737
151N_DA123:DT57_R1.458-0.3070.4041.342-11.465-7.424
154N_DA126:DT54_R0.1360.363-1.088-40.953-24.9943.076
159N_DA131:DT49_R0.047-0.112-0.49-17.174-2.0924.135
160N_DA132:DT48_R1.122-0.301-0.661-15.417-24.086-3.928
163N_DA135:DT45_R-0.2330.203-0.406-18.764-19.88612.331
168N_DA140:DT40_R0.1560.2430.203-1.199-13.9113.997
169N_DA141:DT39_R0.837-0.174-0.241-10.424-26.2034.614
172N_DA144:DT36_R0.4340.1030.352-9.432-18.4178.986
177N_DA149:DT31_R0.6040.0390.3796.191-21.7696.735
178N_DA150:DT30_R0.3390.197-0.014-2.112-18.6158.85
181N_DA153:DT27_R1.065-0.4490.638-3.858-9.888-6.036
186N_DA158:DT22_R0.2590.2430.752-3.808-0.9377.452
187N_DA159:DT21_R0.406-0.4041.3397.292-18.616-10.265
190N_DA162:DT18_R0.2270.0680.226-4.527-21.80211.464
195N_DA167:DT13_R1.434-0.1160.45912.297-16.720.613
196N_DA168:DT12_R0.223-0.5010.9927.446-13.902-10.239
13N_DC73:DG107_R0.276-0.185-0.3921.045-10.922-3.463
14N_DC74:DG106_R1.162-0.465-0.509-18.002-7.738-4.987
15N_DC75:DG105_R-0.9640.0290.427-12.665-14.384-5.618
112N_DC82:DG98_R0.7120.096-0.71215.046-12.2545.452
113N_DC84:DG96_R0.719-0.474-0.9913.6770.5090.468
120N_DC91:DG89_R0.215-0.08-1.0891.757-20.2235.866
121N_DC92:DG88_R1.222-0.7260.379-5.282-21.5971.753
122N_DC93:DG87_R-1.63-0.122-0.3681.213-15.022-3.593
129N_DC100:DG80_R-0.167-0.245-2.46428.748-14.984-5.971
130N_DC101:DG79_R0.746-0.708-0.866-11.892-16.1082.92
131N_DC102:DG78_R0.041-0.479-1.111-6.072-8.352-0.128
138N_DC109:DG71_R0.503-0.256-1.01918.9978.8972.593
139N_DC110:DG70_R-1.832-0.667-1.488-8.6925.451-14.955
140N_DC111:DG69_R-0.156-0.2121.566-21.7854.132-3.784
147N_DC118:DG62_R0.5280.114-1.52929.763-21.8981.117
148N_DC120:DG60_R0.104-0.525-1.6910.916-17.8576.236
155N_DC127:DG53_R0.714-0.309-0.256-22.941-4.3690.967
156N_DC128:DG52_R-0.809-0.315-0.584-16.1965.356-10.32
157N_DC129:DG51_R1.36-0.4941.543-1.8644.0872.737
164N_DC136:DG44_R1.247-0.1510.35810.7295.735-4.696
165N_DC137:DG43_R-0.683-0.26-0.124-11.433-14.355-6.281
166N_DC138:DG42_R0.0610.1670.429-7.669-17.1168.588
173N_DC145:DG35_R0.329-0.2340.0321.623-5.606-1.042
174N_DC146:DG34_R-0.575-0.047-1.0935.016-3.086-25.25
175N_DC147:DG33_R2.47-0.5290.103-14.9642.582-2.587
182N_DC154:DG26_R0.366-0.358-0.6985.129-13.671-4.506
183N_DC155:DG25_R0.577-0.4910.609-1.0760.369-0.487
184N_DC156:DG24_R-0.02-0.0780.164-12.48-14.5513.35
191N_DC163:DG17_R1.164-0.13-0.633-1.013-9.373-0.105
192N_DC164:DG16_R-1.620.041-0.011-23.1914.411-1.942
193N_DC165:DG15_R-1.6240.061-1.026-22.447.064-33.421
16N_DG76:DC104_R0.2240.6810.3830.526-17.07221.325
114N_DG85:DC95_R0.089-0.065-0.2941.05-18.415.337
123N_DG94:DC86_R0.8170.4770.46822.405-15.0211.604
132N_DG103:DC77_R-0.420.159-0.595-5.399-3.378.018
141N_DG112:DC68_R-0.6420.119-0.1472.895-20.2741.791
149N_DG121:DC59_R-0.2770.201-0.412-1.909-16.6046.714
158N_DG130:DC50_R-0.9940.099-0.02723.284-23.7064.543
167N_DG139:DC41_R-0.4590.2550.65317.28-14.9696.606
176N_DG148:DC32_R0.062-0.03-0.1310.394-15.766-1.569
185N_DG157:DC23_R0.4280.0480.6310.635-10.91-2.028
194N_DG166:DC14_R-1.096-0.001-0.36-11.077-18.421.954
11N_DT71:DA109_R-1.584-0.0411.118-22.747-19.341-7.39
19N_DT79:DA101_R-1.685-0.0610.742-10.811-4.1097.734
110N_DT80:DA100_R-0.331-0.2541.205-24.0993.463-7.854
117N_DT88:DA92_R0.00.050.632-14.377-3.7051.385
118N_DT89:DA91_R0.701-0.021-0.001-15.448-3.138-1.056
126N_DT97:DA83_R0.5260.137-0.096-10.033-29.62410.359
127N_DT98:DA82_R0.841-0.3090.666-17.386-11.959-3.41
135N_DT106:DA74_R0.152-0.3270.898-8.7573.376-1.484
136N_DT107:DA73_R-0.2730.374-0.244-10.804-6.1294.04
144N_DT115:DA65_R-0.9280.0590.932-7.11-13.58-5.385
145N_DT116:DA64_R0.174-0.0880.1792.793-11.77111.782
152N_DT124:DA56_R-0.1310.2390.673-7.75-12.4525.772
153N_DT125:DA55_R-0.6140.2530.855-14.158-12.4245.149
161N_DT133:DA47_R0.188-0.228-0.542-4.321-14.99-1.39
162N_DT134:DA46_R-0.11-0.111-0.024-8.55-4.938-0.886
170N_DT142:DA38_R-0.639-0.091-0.146-18.794-28.53-12.481
171N_DT143:DA37_R-0.0290.2250.989-28.003-16.119-9.375
179N_DT151:DA29_R0.946-0.1730.087-3.915-27.1971.902
180N_DT152:DA28_R0.222-0.0421.009-22.474-15.113-8.396
188N_DT160:DA20_R-0.362-0.10.808-11.532-19.187-0.506
189N_DT161:DA19_R-0.5790.0071.126-29.081-13.635-3.858
197N_DT169:DA11_R-0.3230.050.666-7.38-17.138-5.316

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.