6AMA: Base Pair Morphology Parameters

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As of 11-May-2022 number of released structures: 12077

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NDB ID: 6AMA PDB ID: 6AMA

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	2	N_DA72:DT108_R	-1.631	-0.347	-1.02	-30.682	-32.842	-4.785
1	7	N_DA77:DT103_R	-1.016	-0.395	0.363	-4.766	-18.176	2.951
1	8	N_DA78:DT102_R	-0.277	-0.674	1.114	-5.642	-17.065	-1.029
1	11	N_DA81:DT99_R	-0.342	0.081	0.168	-0.839	-1.963	0.771
1	15	N_DA86:DT94_R	0.911	0.192	-0.547	-14.255	-5.672	7.54
1	16	N_DA87:DT93_R	0.894	0.021	-0.051	-14.49	-2.936	5.983
1	19	N_DA90:DT90_R	1.671	-0.144	-1.149	-29.334	-7.553	-6.11
1	24	N_DA95:DT85_R	1.152	-0.269	-0.59	0.11	-13.225	-0.813
1	25	N_DA96:DT84_R	1.0	-0.051	0.066	-3.86	-25.612	12.448
1	28	N_DA99:DT81_R	1.031	-0.199	-0.489	-7.434	-3.77	-2.572
1	33	N_DA104:DT76_R	0.695	-0.269	-0.144	-7.665	1.198	-1.98
1	34	N_DA105:DT75_R	1.45	-0.378	1.124	-0.835	-3.713	-8.98
1	37	N_DA108:DT72_R	0.385	0.095	-0.924	-22.875	-10.373	-1.616
1	42	N_DA113:DT67_R	0.79	0.281	-0.65	-3.988	-21.988	-1.292
1	43	N_DA114:DT66_R	-0.673	-0.484	0.14	-8.353	-13.529	-2.656
1	46	N_DA117:DT63_R	-0.506	0.008	-0.785	-15.489	-22.943	8.753
1	50	N_DA122:DT58_R	0.365	-0.049	-0.251	1.494	-15.37	-7.737
1	51	N_DA123:DT57_R	1.458	-0.307	0.404	1.342	-11.465	-7.424
1	54	N_DA126:DT54_R	0.136	0.363	-1.088	-40.953	-24.994	3.076
1	59	N_DA131:DT49_R	0.047	-0.112	-0.49	-17.174	-2.092	4.135
1	60	N_DA132:DT48_R	1.122	-0.301	-0.661	-15.417	-24.086	-3.928
1	63	N_DA135:DT45_R	-0.233	0.203	-0.406	-18.764	-19.886	12.331
1	68	N_DA140:DT40_R	0.156	0.243	0.203	-1.199	-13.911	3.997
1	69	N_DA141:DT39_R	0.837	-0.174	-0.241	-10.424	-26.203	4.614
1	72	N_DA144:DT36_R	0.434	0.103	0.352	-9.432	-18.417	8.986
1	77	N_DA149:DT31_R	0.604	0.039	0.379	6.191	-21.769	6.735
1	78	N_DA150:DT30_R	0.339	0.197	-0.014	-2.112	-18.615	8.85
1	81	N_DA153:DT27_R	1.065	-0.449	0.638	-3.858	-9.888	-6.036
1	86	N_DA158:DT22_R	0.259	0.243	0.752	-3.808	-0.937	7.452
1	87	N_DA159:DT21_R	0.406	-0.404	1.339	7.292	-18.616	-10.265
1	90	N_DA162:DT18_R	0.227	0.068	0.226	-4.527	-21.802	11.464
1	95	N_DA167:DT13_R	1.434	-0.116	0.459	12.297	-16.72	0.613
1	96	N_DA168:DT12_R	0.223	-0.501	0.992	7.446	-13.902	-10.239
1	3	N_DC73:DG107_R	0.276	-0.185	-0.392	1.045	-10.922	-3.463
1	4	N_DC74:DG106_R	1.162	-0.465	-0.509	-18.002	-7.738	-4.987
1	5	N_DC75:DG105_R	-0.964	0.029	0.427	-12.665	-14.384	-5.618
1	12	N_DC82:DG98_R	0.712	0.096	-0.712	15.046	-12.254	5.452
1	13	N_DC84:DG96_R	0.719	-0.474	-0.991	3.677	0.509	0.468
1	20	N_DC91:DG89_R	0.215	-0.08	-1.089	1.757	-20.223	5.866
1	21	N_DC92:DG88_R	1.222	-0.726	0.379	-5.282	-21.597	1.753
1	22	N_DC93:DG87_R	-1.63	-0.122	-0.368	1.213	-15.022	-3.593
1	29	N_DC100:DG80_R	-0.167	-0.245	-2.464	28.748	-14.984	-5.971
1	30	N_DC101:DG79_R	0.746	-0.708	-0.866	-11.892	-16.108	2.92
1	31	N_DC102:DG78_R	0.041	-0.479	-1.111	-6.072	-8.352	-0.128
1	38	N_DC109:DG71_R	0.503	-0.256	-1.019	18.997	8.897	2.593
1	39	N_DC110:DG70_R	-1.832	-0.667	-1.488	-8.692	5.451	-14.955
1	40	N_DC111:DG69_R	-0.156	-0.212	1.566	-21.785	4.132	-3.784
1	47	N_DC118:DG62_R	0.528	0.114	-1.529	29.763	-21.898	1.117
1	48	N_DC120:DG60_R	0.104	-0.525	-1.69	10.916	-17.857	6.236
1	55	N_DC127:DG53_R	0.714	-0.309	-0.256	-22.941	-4.369	0.967
1	56	N_DC128:DG52_R	-0.809	-0.315	-0.584	-16.196	5.356	-10.32
1	57	N_DC129:DG51_R	1.36	-0.494	1.543	-1.864	4.087	2.737
1	64	N_DC136:DG44_R	1.247	-0.151	0.358	10.729	5.735	-4.696
1	65	N_DC137:DG43_R	-0.683	-0.26	-0.124	-11.433	-14.355	-6.281
1	66	N_DC138:DG42_R	0.061	0.167	0.429	-7.669	-17.116	8.588
1	73	N_DC145:DG35_R	0.329	-0.234	0.032	1.623	-5.606	-1.042
1	74	N_DC146:DG34_R	-0.575	-0.047	-1.093	5.016	-3.086	-25.25
1	75	N_DC147:DG33_R	2.47	-0.529	0.103	-14.964	2.582	-2.587
1	82	N_DC154:DG26_R	0.366	-0.358	-0.698	5.129	-13.671	-4.506
1	83	N_DC155:DG25_R	0.577	-0.491	0.609	-1.076	0.369	-0.487
1	84	N_DC156:DG24_R	-0.02	-0.078	0.164	-12.48	-14.551	3.35
1	91	N_DC163:DG17_R	1.164	-0.13	-0.633	-1.013	-9.373	-0.105
1	92	N_DC164:DG16_R	-1.62	0.041	-0.011	-23.191	4.411	-1.942
1	93	N_DC165:DG15_R	-1.624	0.061	-1.026	-22.44	7.064	-33.421
1	6	N_DG76:DC104_R	0.224	0.681	0.383	0.526	-17.072	21.325
1	14	N_DG85:DC95_R	0.089	-0.065	-0.294	1.05	-18.41	5.337
1	23	N_DG94:DC86_R	0.817	0.477	0.468	22.405	-15.021	1.604
1	32	N_DG103:DC77_R	-0.42	0.159	-0.595	-5.399	-3.37	8.018
1	41	N_DG112:DC68_R	-0.642	0.119	-0.147	2.895	-20.274	1.791
1	49	N_DG121:DC59_R	-0.277	0.201	-0.412	-1.909	-16.604	6.714
1	58	N_DG130:DC50_R	-0.994	0.099	-0.027	23.284	-23.706	4.543
1	67	N_DG139:DC41_R	-0.459	0.255	0.653	17.28	-14.969	6.606
1	76	N_DG148:DC32_R	0.062	-0.03	-0.131	0.394	-15.766	-1.569
1	85	N_DG157:DC23_R	0.428	0.048	0.631	0.635	-10.91	-2.028
1	94	N_DG166:DC14_R	-1.096	-0.001	-0.36	-11.077	-18.42	1.954
1	1	N_DT71:DA109_R	-1.584	-0.041	1.118	-22.747	-19.341	-7.39
1	9	N_DT79:DA101_R	-1.685	-0.061	0.742	-10.811	-4.109	7.734
1	10	N_DT80:DA100_R	-0.331	-0.254	1.205	-24.099	3.463	-7.854
1	17	N_DT88:DA92_R	0.0	0.05	0.632	-14.377	-3.705	1.385
1	18	N_DT89:DA91_R	0.701	-0.021	-0.001	-15.448	-3.138	-1.056
1	26	N_DT97:DA83_R	0.526	0.137	-0.096	-10.033	-29.624	10.359
1	27	N_DT98:DA82_R	0.841	-0.309	0.666	-17.386	-11.959	-3.41
1	35	N_DT106:DA74_R	0.152	-0.327	0.898	-8.757	3.376	-1.484
1	36	N_DT107:DA73_R	-0.273	0.374	-0.244	-10.804	-6.129	4.04
1	44	N_DT115:DA65_R	-0.928	0.059	0.932	-7.11	-13.58	-5.385
1	45	N_DT116:DA64_R	0.174	-0.088	0.179	2.793	-11.771	11.782
1	52	N_DT124:DA56_R	-0.131	0.239	0.673	-7.75	-12.452	5.772
1	53	N_DT125:DA55_R	-0.614	0.253	0.855	-14.158	-12.424	5.149
1	61	N_DT133:DA47_R	0.188	-0.228	-0.542	-4.321	-14.99	-1.39
1	62	N_DT134:DA46_R	-0.11	-0.111	-0.024	-8.55	-4.938	-0.886
1	70	N_DT142:DA38_R	-0.639	-0.091	-0.146	-18.794	-28.53	-12.481
1	71	N_DT143:DA37_R	-0.029	0.225	0.989	-28.003	-16.119	-9.375
1	79	N_DT151:DA29_R	0.946	-0.173	0.087	-3.915	-27.197	1.902
1	80	N_DT152:DA28_R	0.222	-0.042	1.009	-22.474	-15.113	-8.396
1	88	N_DT160:DA20_R	-0.362	-0.1	0.808	-11.532	-19.187	-0.506
1	89	N_DT161:DA19_R	-0.579	0.007	1.126	-29.081	-13.635	-3.858
1	97	N_DT169:DA11_R	-0.323	0.05	0.666	-7.38	-17.138	-5.316

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.