A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 17-Oct-2018 number of released structures: 9817
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NDB ID: 6AR1  PDB ID: 6AR1 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
15B_DA5:U10_C0.5940.1430.2593.695-5.487-5.3
19B_DA9:U6_C-0.308-0.2550.464-3.155-4.916-1.949
110B_DA10:U5_C0.122-0.090.2754.663-17.045-1.772
11B_DC1:G14_C0.1810.357-0.56110.655-13.174-5.683
13B_DC3:G12_C0.620.581-0.56713.357-18.973.366
14B_DC4:G11_C0.489-0.143-0.202-1.612.299-2.37
18B_DC8:G7_C0.48-0.117-0.591-0.827-12.9046.962
111B_DC11:G4_C0.30.030.1676.12-7.76.481
16B_DG6:C9_C-0.348-0.033-0.133-6.621-6.9364.888
17B_DG7:C8_C0.549-0.114-0.648-13.27-9.5793.823
12B_DT2:A13_C0.1760.914-1.3724.343-19.331-9.034
115E_DA5:U10_F-0.0150.0620.03710.197-11.321-3.575
119E_DA9:U6_F-0.019-0.2130.4320.345-6.933.409
120E_DA10:U5_F0.223-0.2620.2975.7-13.976-0.795
113E_DC3:G12_F0.0660.488-0.76220.791-14.2012.559
114E_DC4:G11_F0.54-0.2160.134-4.614-0.6143.008
118E_DC8:G7_F0.206-0.209-0.078-9.26-5.0225.87
121E_DC11:G4_F0.266-0.06-0.42521.238-16.4125.394
116E_DG6:C9_F-0.1710.333-0.004-5.849-12.16310.662
117E_DG7:C8_F0.1580.33-0.699-12.777-10.4416.695
112E_DT2:A13_F-0.4460.37-0.67817.542-9.989-6.723

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.