6B0Q: Base Pair Morphology Parameters

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As of 22-Jun-2022 number of released structures: 12128

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NDB ID: 6B0Q PDB ID: 6B0Q

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	8	E_DA9:DT6_F	-0.072	-0.02	-0.039	-2.452	-9.202	4.177
1	2	E_DC3:DG12_F	0.537	-0.129	-0.328	13.24	-5.251	6.014
1	1	E_DG2:DC13_F	-0.257	-0.017	-0.116	-4.283	-3.001	5.384
1	3	E_DG4:DC11_F	-0.385	-0.131	0.177	1.997	-4.997	1.765
1	5	E_DG6:DC9_F	-0.313	0.035	0.574	-8.502	-14.421	1.153
1	6	E_DG7:DC8_F	-0.05	-0.165	-0.178	-4.223	-2.359	-4.746
1	7	E_DG8:DC7_F	-0.403	-0.162	-0.128	0.318	-6.701	5.492
1	9	E_DG10:DC5_F	0.014	-0.086	-0.229	-1.62	-6.145	-2.732
1	11	E_DG12:DC3_F	-0.454	0.029	0.327	-3.613	-5.642	8.974
1	4	E_DT5:DA10_F	0.12	0.034	-0.011	5.776	-0.947	8.869
1	10	E_DT11:DA4_F	-0.165	-0.029	-0.01	1.629	-9.628	4.217
1	12	E_DT13:DA2_F	-0.227	-0.106	0.44	-4.47	-12.028	-0.866
1	13	E_DT14:DA1_F	0.005	-0.117	0.176	3.989	-0.051	-0.411
1	21	B_DA9:DT7_C	-0.132	-0.053	-0.087	-0.301	-9.42	9.261
1	15	B_DC3:DG13_C	0.425	0.035	-0.255	11.445	-6.745	5.577
1	14	B_DG2:DC14_C	-0.465	0.176	0.062	-2.471	-7.767	9.726
1	16	B_DG4:DC12_C	-0.166	-0.125	0.16	-1.535	-7.493	-2.996
1	18	B_DG6:DC10_C	-0.335	0.046	0.234	-11.629	-12.853	2.416
1	19	B_DG7:DC9_C	-0.052	-0.212	0.07	-0.117	-2.846	-2.708
1	20	B_DG8:DC8_C	-0.15	-0.154	0.019	-0.396	-17.579	-0.853
1	22	B_DG10:DC6_C	0.061	-0.09	-0.209	-4.555	-6.489	-3.384
1	24	B_DG12:DC4_C	-0.399	-0.084	0.224	-1.909	-4.624	5.247
1	17	B_DT5:DA11_C	0.221	-0.16	0.13	-2.287	-3.252	5.661
1	23	B_DT11:DA5_C	-0.22	-0.134	-0.03	2.099	-7.649	4.487
1	25	B_DT13:DA3_C	-0.305	-0.076	0.626	-0.897	-9.303	1.827
1	26	B_DT14:DA2_C	0.256	-0.05	0.252	9.299	-6.533	-0.344

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.