A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 22-Jun-2022 number of released structures: 12128
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NDB ID: 6B0Q  PDB ID: 6B0Q 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
18E_DA9:DT6_F-0.072-0.02-0.039-2.452-9.2024.177
12E_DC3:DG12_F0.537-0.129-0.32813.24-5.2516.014
11E_DG2:DC13_F-0.257-0.017-0.116-4.283-3.0015.384
13E_DG4:DC11_F-0.385-0.1310.1771.997-4.9971.765
15E_DG6:DC9_F-0.3130.0350.574-8.502-14.4211.153
16E_DG7:DC8_F-0.05-0.165-0.178-4.223-2.359-4.746
17E_DG8:DC7_F-0.403-0.162-0.1280.318-6.7015.492
19E_DG10:DC5_F0.014-0.086-0.229-1.62-6.145-2.732
111E_DG12:DC3_F-0.4540.0290.327-3.613-5.6428.974
14E_DT5:DA10_F0.120.034-0.0115.776-0.9478.869
110E_DT11:DA4_F-0.165-0.029-0.011.629-9.6284.217
112E_DT13:DA2_F-0.227-0.1060.44-4.47-12.028-0.866
113E_DT14:DA1_F0.005-0.1170.1763.989-0.051-0.411
121B_DA9:DT7_C-0.132-0.053-0.087-0.301-9.429.261
115B_DC3:DG13_C0.4250.035-0.25511.445-6.7455.577
114B_DG2:DC14_C-0.4650.1760.062-2.471-7.7679.726
116B_DG4:DC12_C-0.166-0.1250.16-1.535-7.493-2.996
118B_DG6:DC10_C-0.3350.0460.234-11.629-12.8532.416
119B_DG7:DC9_C-0.052-0.2120.07-0.117-2.846-2.708
120B_DG8:DC8_C-0.15-0.1540.019-0.396-17.579-0.853
122B_DG10:DC6_C0.061-0.09-0.209-4.555-6.489-3.384
124B_DG12:DC4_C-0.399-0.0840.224-1.909-4.6245.247
117B_DT5:DA11_C0.221-0.160.13-2.287-3.2525.661
123B_DT11:DA5_C-0.22-0.134-0.032.099-7.6494.487
125B_DT13:DA3_C-0.305-0.0760.626-0.897-9.3031.827
126B_DT14:DA2_C0.256-0.050.2529.299-6.533-0.344

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.